Strain Report - Rat Genome Database

Name: BB.SHR-( D6Rat184-D6Rat101 )/K
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BB.SHR-(D6Rat184-D6Rat101)/K

Symbol:

BB.SHR-(D6Rat184-D6Rat101)/K

Strain:

BB.SHR-(D6Rat184-D6Rat101)

Substrain:

RGD ID:

631699

Citation ID:

RRID:RGD_631699

Ontology ID:

RS:0000068

Previously known as:

BB/OK.SHR-(D6Rat184-D6Rat101); BB.SHR-(D6Rat184-D6Rat101)/K; BB.6S

Type:

congenic

Source:

University of Greifswald, Germany

Origin:

Congenic strain originated from an inbred BB/OK strain crossed with diabetes-resistant SHR/Mol females.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	116,506,292 - 130,245,370	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	6	121,224,054 - 135,658,578	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	6	130,448,688 - 144,756,005	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	6	121,381,065 - 135,964,844	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Mapping of novel genes predisposing or protecting diabetes development in the BB/OK rat.	Kloting I, etal., Biochem Biophys Res Commun 1998 Apr 17;245(2):483-6
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D6Rat184)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	116,506,292 - 116,506,390 (+)	MAPPER
Rnor_6.0	6	121,224,054 - 121,224,151	NCBI
Rnor_5.0	6	130,448,688 - 130,448,785	UniSTS
RGSC_v3.4	6	121,381,065 - 121,381,163	RGD
RGSC_v3.4	6	121,381,066 - 121,381,163	UniSTS
RGSC_v3.1	6	121,384,812 - 121,384,910	RGD
Celera	6	114,095,665 - 114,095,762	UniSTS
SHRSP x BN Map	6	70.2599	RGD
SHRSP x BN Map	6	70.2599	UniSTS

Flank 2 / 1 (D6Rat101)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	130,245,261 - 130,245,370 (+)	MAPPER
Rnor_6.0	6	135,658,470 - 135,658,578	NCBI
Rnor_5.0	6	144,755,897 - 144,756,005	UniSTS
RGSC_v3.4	6	135,964,407 - 135,964,844	RGD
RGSC_v3.4	6	135,964,411 - 135,964,519	UniSTS
RGSC_v3.1	6	135,970,598 - 135,970,706	RGD
Celera	6	127,802,576 - 127,802,684	UniSTS
RH 3.4 Map	6	781.7	RGD
RH 3.4 Map	6	781.7	UniSTS
RH 2.0 Map	6	1118.0	RGD
SHRSP x BN Map	6	81.7698	RGD
Cytogenetic Map	6	q32	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2013-07-16	BB.SHR-(D6Rat184-D6Rat101)/K	BB.SHR-(D6Rat184-D6Rat101)	Symbol updated	68687	APPROVED
2013-07-16	BB.SHR-(D6Rat184-D6Rat101)/K	BB.SHR-(D6Rat184-D6Rat101)	Name updated	68913	APPROVED
2013-07-16	BB.SHR-(D6Rat184-D6Rat101)/K	BB.SHR-(D6Rat184-D6Rat101)	Symbol updated	68687	APPROVED
2013-07-16	BB.SHR-(D6Rat184-D6Rat101)/K	BB.SHR-(D6Rat184-D6Rat101)	Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BB.SHR-(D6Rat184-D6Rat101)/K