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Strain Registration

Strain: WKY.SHRSP-(Mt1pa-D1Rat200)/Bbb

Symbol: WKY.SHRSP-(Mt1pa-D1Rat200)/Bbb
Strain: WKY, SHRSP
Substrain: Bbb
RGD ID: 631600
Citation ID: RRID:RGD_631600
Ontology ID: RS:0001065
Previously known as: WKY.SHRSP-(Mt1pa-D1Rat200)/Bbb; B1; WKY-1.SHRSP-(Mt1pa/D1Rat200)/Bbb; MDC-01-81; WKY-1.SHRSP-Mt1pa/D1Rat200
Type: congenic
Source: Max-Delbruck-Center for Molecular Medicine, Freie Universitat Berlin, Berlin, Germany.
Origin: Fragment of the chromosome 1 derived from SHRSP and repeated backcross to WKY
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21125,611,501 - 181,133,270RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01133,076,978 - 197,963,072RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01134,116,233 - 204,941,832RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41126,938,969 - 185,690,396RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Congenic substitution mapping excludes Sa as a candidate gene locus for a blood pressure quantitative trait locus on rat chromosome 1. Hubner N, etal., Hypertension 1999 Oct;34(4 Pt 1):643-8.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. SNP and haplotype mapping for genetic analysis in the rat. Saar K, etal., Nat Genet. 2008 May;40(5):560-6.

Region

Position Markers

Flank 2 / 1 (D1Rat200)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21125,611,501 - 125,611,741 (+)MAPPER
Rnor_6.01133,164,282 - 133,164,521NCBI
Rnor_6.01133,076,978 - 133,077,217NCBI
Rnor_5.01134,116,233 - 134,116,472UniSTS
Rnor_5.01134,203,803 - 134,204,042UniSTS
RGSC_v3.41126,938,969 - 126,939,275RGD
RGSC_v3.41126,939,015 - 126,939,254UniSTS
RGSC_v3.11127,017,358 - 127,017,597RGD
Celera1117,762,193 - 117,762,412UniSTS
RH 3.4 Map1986.1UniSTS
RH 3.4 Map1986.1RGD
RH 2.0 Map1669.6RGD
SHRSP x BN Map161.04RGD
FHH x ACI Map162.2RGD

Flank 1 / 1 (Mt1-ps1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,132,896 - 181,133,270 (+)NCBI
UTH_Rnor_SHR_Utx1189,470,813 - 189,471,187 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01196,656,898 - 196,657,272 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01189,337,455 - 189,337,828 (+)NCBI
Rnor_6.01197,962,698 - 197,963,072 (+)NCBI
Rnor_5.01204,941,458 - 204,941,832 (+)NCBI
RGSC_v3.41185,689,821 - 185,690,396 (+)NCBI
RGSC_v3.11185,839,796 - 185,840,277 (+)NCBI
Celera1178,790,910 - 178,791,284 (+)NCBI
RH 2.0 Map1962.0RGD
Cytogenetic Map1q36NCBI
Strain QTL Data
Symbol Name Trait
Bp88 Blood pressure QTL 88 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Developed for testing whether the region surrounding Sa gene was involved in the blood pressure regulation. Basal systolic and diastolic blood pressure are higher as compared to the compared with the normotensive WKY. 619643
strain_characteristics Basal systolic and diastolic blood pressure are higher as compared to the compared with the normotensive WKY. 619643