Strain Report - Rat Genome Database

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Strain: SHR.BN-(D2Rat171-D2Arb24)/Ipcv

Symbol: SHR.BN-(D2Rat171-D2Arb24)/Ipcv
Strain: SHR.BN-(D2Rat171-D2Arb24)
Substrain: Ipcv
RGD ID: 631578
Citation ID: RRID:RGD_631578
Ontology ID: RS:0000717
Previously known as: SHR.BN-(D2Rat171-D2Arb24)/Ipcv; SHR/Ola.BN/Cr-(D2Rat171-D2Arb24)/Ipcv; SHR-2
Type: congenic
Source: Institute of Physiology, Czech Academy of Sciences, Prague 4, Czech Republic.
Origin: This congenic strain carries a BN/Crl chromosome 2 segment transferred to the SHR/OlaIpcv background
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22112,456,140 - 212,696,837RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.2967,703,258 - 67,703,293RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02116,075,644 - 228,737,869RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02135,770,850 - 248,088,631RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42116,874,922 - 221,284,686RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
# Reference Title Reference Citation
1. Genetic isolation of a blood pressure quantitative trait locus on chromosome 2 in the spontaneously hypertensive rat. Pravenec M, etal., J Hypertens 2001 Jun;19(6):1061-4.
2. Mutant Wars2 gene in spontaneously hypertensive rats impairs brown adipose tissue function and predisposes to visceral obesity. Pravenec M, etal., Physiol Res. 2017 Dec 20;66(6):917-924. doi: 10.33549/physiolres.933811.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D2Rat171)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22112,456,140 - 112,456,288 (+)MAPPER
mRatBN7.2967,703,258 - 67,703,293 (+)MAPPER
Rnor_6.02116,075,644 - 116,075,793NCBI
Rnor_5.02135,770,850 - 135,770,999UniSTS
RGSC_v3.42116,874,923 - 116,875,072UniSTS
RGSC_v3.42116,874,922 - 116,875,068RGD
RGSC_v3.12116,819,884 - 116,820,030RGD
Celera2107,642,786 - 107,642,935UniSTS
RH 3.4 Map2715.9UniSTS
RH 3.4 Map2715.9RGD
SHRSP x BN Map239.8998RGD
SHRSP x BN Map239.8998UniSTS
Cytogenetic Map2q24UniSTS

Flank 2 / 1 (D2Arb24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22212,696,524 - 212,696,837 (+)MAPPER
Rnor_6.02228,737,559 - 228,737,869NCBI
Rnor_5.02248,088,321 - 248,088,631UniSTS
RGSC_v3.42221,284,375 - 221,284,686RGD
RGSC_v3.42221,284,376 - 221,284,686UniSTS
RGSC_v3.12221,270,942 - 221,271,253RGD
Celera2205,089,341 - 205,089,651UniSTS
Cytogenetic Map2 RGD
Strain QTL Data
Symbol Name Trait
Bp105 Blood pressure QTL 105 arterial blood pressure trait   (VT:2000000)    

Additional Information