Strain Report - Rat Genome Database

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Strain: SS.LEW-(D5Rat130-D5Mco10)/Jr

Symbol: SS.LEW-(D5Rat130-D5Mco10)/Jr
Strain: SS.LEW-(D5Rat130-D5Mco10)
Substrain: Jr
RGD ID: 629578
Citation ID: RRID:RGD_629578
Ontology ID: RS:0000832
Also Known As: SS.LEW-(D5Rat130-D5Mco10)/Jr
Type: congenic
Available Source: Not Available
Origination: Department of Physiology and Molecular Medicine, Medical College of Ohio, Toledo, Ohio.
Description: A large segment of chr. 5 from LEW was inserted into Dahl salt-sensitive (SS/Jr) background, congenic substrains were developed by crossing SS.LEW to SS for 8 generations
Inbred Generations: F20
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2531,663,789 - 161,481,680RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0531,926,122 - 168,109,659RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0536,590,997 - 171,686,754RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4532,701,659 - 168,174,140RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Two closely linked interactive blood pressure QTL on rat chromosome 5 defined using congenic Dahl rats. Garrett MR and Rapp JP, Physiol Genomics 2002 Feb 28;8(2):81-6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Accelerated congenics for mapping two blood pressure quantitative trait loci on chromosome 10 of Dahl rats. Sivo Z, etal., J Hypertens 2002 Jan;20(1):45-53.


Position Markers

Flank 1 / 1 (D5Rat130)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2531,663,789 - 31,663,928 (+)MAPPER
Rnor_6.0531,926,122 - 31,926,260NCBI
Rnor_5.0536,590,997 - 36,591,135UniSTS
RGSC_v3.4532,701,967 - 32,702,105UniSTS
RGSC_v3.4532,701,659 - 32,702,109RGD
RGSC_v3.1532,702,146 - 32,702,284RGD
Celera530,814,646 - 30,814,784UniSTS
RH 3.4 Map5165.04UniSTS
RH 3.4 Map5165.04RGD
RH 2.0 Map5189.1RGD
SHRSP x BN Map519.3299RGD

Flank 2 / 1 (D5Mco10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,481,433 - 161,481,680 (+)MAPPER
Rnor_6.05168,109,415 - 168,109,659NCBI
Rnor_5.05171,686,510 - 171,686,754UniSTS
RGSC_v3.45168,173,895 - 168,174,140RGD
RGSC_v3.45168,173,896 - 168,174,140UniSTS
RGSC_v3.15168,184,083 - 168,184,328RGD
Celera5159,733,610 - 159,733,854UniSTS
Cytogenetic Map5q36UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Longer congenic segments retain the QTL allele for low blood pressure as compared to the parent S strain. 619649
strain_life_disease This strain has low blood pressure alleles. 619649