Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS-Mstnem3Mcwi-/-

Symbol: SS-Mstnem3Mcwi-/-
Strain: SS-Mstnem3-/Mstnem3-
Substrain: Mcwi
Full Name: SS-Mstnem3Mcwi-/Mstnem3Mcwi-
RGD ID: 5686718
Citation ID: RRID:RGD_5686718
Ontology ID: RS:0003070
Alleles: Mstnem3Mcwi
Previously known as: SS-Mstnem3Mcwi-/-; SS-Mstnem3Mcwi/1Mcwi; SS-Mstnem3Mcwi/1Mcwi; SS-Mstnem3Mcwi-/Mstnem3Mcwi-
Type: mutant
Source: PhysGen Knockouts
Origin: ZFN mutant founders were backcrossed with SS/JrHsdMcwi to get heterozygous offsprings which were intercrossed and offsprings maintained as homozygous and heterozygous breeders.
Genetic Status: Homozygous
Last Known Status: Cryopreserved Sperm (as of 2019-07-26)
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,456,663 - 48,456,670RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0953,310,977 - 53,315,804RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0952,977,371 - 52,982,198RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4945,426,831 - 45,431,658RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Mstnem3Mcwi-var1 chr9 48456663 48456670 TTAGAAAG - deletion mRatBN7.2

Additional Information

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Mstnem3Mcwi-/-  SS-Mstnem3Mcwi-/Mstnem3Mcwi-  SS-Mstnem3Mcwi-/-  SS-Mstnem3Mcwi-/Mstnem3Mcwi-  Symbol and/or name change 68913 APPROVED