Strain Report - Rat Genome Database

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Strain: SS-Msraem4Mcwi

Symbol: SS-Msraem4Mcwi
Strain: SS-Msraem4
Substrain: Mcwi
RGD ID: 5509989
Citation ID: RRID:RGD_5509989
Ontology ID: RS:0003007
Alleles: Msraem4Mcwi
Also Known As: SS-Msraem4Mcwi; SS-Msra^[em4Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTCATCTTCGAAGGTCatcagcGCGGAGGAAGCT into SS/JrHsdMcwi rat embryos. The resulting mutation is a net 1-bp frameshift deletion in exon 1.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21538,676,398 - 38,676,402RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01547,488,333 - 47,800,662RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01551,307,920 - 51,550,758RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41543,509,775 - 43,756,283RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Msraem4Mcwi-var1 chr15 38676398 38676402 CTGAT CTTC delins mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Msraem4Mcwi    SS-Msraem4Mcwi    Name updated 68913 APPROVED