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Strain Registration

Strain: ACI.BN-(D5Rat113-D5Rat159)/Shul

Symbol: ACI.BN-(D5Rat113-D5Rat159)/Shul
Strain: ACI.BN-(D5Rat113-D5Rat159)
Substrain: Shul
RGD ID: 5509087
Citation ID: RRID:RGD_5509087
Ontology ID: RS:0002945
Also Known As: ACI.BN-Emca8b1; Emca8b1; ACI.BN-(D5Rat113-D5Rat159)/Shul
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain contains a region of BN/SsNHsd chromosome 5 transferred to the ACI/SegHsd strain background
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2573,483,796 - 73,483,994RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0575,809,470 - 75,809,667RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0579,957,402 - 79,957,599RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4576,707,366 - 76,707,563RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Mapping of three genetic determinants of susceptibility to estrogen-induced mammary cancer within the Emca8 locus on rat chromosome 5. Schaffer BS, etal., Cancer Prev Res (Phila). 2013 Jan;6(1):59-69. doi: 10.1158/1940-6207.CAPR-12-0346-T. Epub 2012 Nov 14.

Region

Position Markers

Flank 1 / 1 (D5Rat113)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2573,483,796 - 73,483,994 (+)MAPPER
Rnor_6.0575,809,470 - 75,809,667NCBI
Rnor_5.0579,957,402 - 79,957,599UniSTS
RGSC_v3.4576,707,366 - 76,707,563UniSTS
RGSC_v3.4576,707,366 - 76,707,563RGD
RGSC_v3.1576,712,479 - 76,712,676RGD
Celera572,307,346 - 72,307,543UniSTS
RH 3.4 Map5504.5RGD
RH 3.4 Map5504.5UniSTS
SHRSP x BN Map543.4199RGD
SHRSP x BN Map543.4199UniSTS

Flank 2 / 1 (D5Rat159)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.15121,649,591 - 121,649,993RGD
SHRSP x BN Map563.7699UniSTS
SHRSP x BN Map563.7699RGD
Strain QTL Data
Symbol Name Trait
Emca13 Estrogen-induced mammary cancer QTL 13 mammary gland integrity trait   (VT:0010552)    

Additional Information