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Strain Registration

Strain: ACI.BN-(D5Mgh17-D5Mgh15)/Shul

Symbol: ACI.BN-(D5Mgh17-D5Mgh15)/Shul
Strain: ACI.BN-(D5Mgh17-D5Mgh15)
Substrain: Shul
RGD ID: 5144110
Citation ID: RRID:RGD_5144110
Ontology ID: RS:0002643
Also Known As: ACI.BN-Emca8; Emca8; ACI.BN-(D5Mgh17-D5Mgh15)/Shul
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain is developed by further genotyping ACI.BN-(D5Mgh17-D5Rat205)/Shul.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2514,529,225 - 161,165,651RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0514,408,903 - 167,739,697RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0519,190,627 - 171,364,652RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4514,730,738 - 167,844,737RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Mapping of three genetic determinants of susceptibility to estrogen-induced mammary cancer within the Emca8 locus on rat chromosome 5. Schaffer BS, etal., Cancer Prev Res (Phila). 2013 Jan;6(1):59-69. doi: 10.1158/1940-6207.CAPR-12-0346-T. Epub 2012 Nov 14.

Region

Position Markers

Flank 1 / 1 (D5Mgh17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2514,529,225 - 14,529,436 (+)MAPPER
Rnor_6.0514,408,903 - 14,409,113NCBI
Rnor_5.0519,190,627 - 19,190,837UniSTS
RGSC_v3.4514,730,738 - 14,730,949RGD
RGSC_v3.4514,730,739 - 14,730,949UniSTS
RGSC_v3.1514,730,738 - 14,730,949RGD
Celera513,900,026 - 13,900,236UniSTS
RH 2.0 Map573.0RGD
SHRSP x BN Map55.82RGD
FHH x ACI Map52.2099RGD
Cytogenetic Map5 RGD

Flank 2 / 1 (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,165,494 - 161,165,651 (+)MAPPER
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.15167,854,767 - 167,854,925RGD
RH 3.4 Map51122.3RGD
RH 3.4 Map51122.3UniSTS
RH 2.0 Map51103.8RGD
Cytogenetic Map5 RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease exhibits reduced susceptibility as compared to parental ACI/SegHsd rats 7364727
strain_life_disease number of tumors per rat ranged from 0-4; prolonged latency to appearance of the first palpable tumor; reduced incidence and tumor number as compared to ACI/SegHsd 7364727