Strain Report - Rat Genome Database

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Strain: SS-Mstnem1Mcwi

Symbol: SS-Mstnem1Mcwi
Strain: SS-Mstnem1
Substrain: Mcwi
RGD ID: 5143985
Citation ID: RRID:RGD_5143985
Ontology ID: RS:0002623
Alleles: Mstnem1Mcwi
Also Known As: SS-Mstnem1Mcwi; SS-Mstn^[em1Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTTATTCCTTTGCAGCTGActttctAATGCAAGCGGATGGA into SS/JrHsdMcwi rat embryos. The resulting mutation deletes part of exon 2 and its splice acceptor.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,456,663 - 48,456,680RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0953,310,977 - 53,315,804RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0952,977,371 - 52,982,198RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4945,426,831 - 45,431,658RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Mstnem1Mcwi-var1 chr9 48456663 48456680 TTAGAAAGTCAGCTGCAA - deletion mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Mstnem1Mcwi    SS-Mstnem1Mcwi    Name updated 68913 APPROVED