Strain Report - Rat Genome Database

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Strain: WF.COP-(D7Rat39-D7Uwm12)/2Uwm

Symbol: WF.COP-(D7Rat39-D7Uwm12)/2Uwm
Strain: WF.COP-(D7Rat39-D7Uwm12)/2
Substrain: Uwm
RGD ID: 5134953
Citation ID: RRID:RGD_5134953
Ontology ID: RS:0002610
Also Known As: WF.COP congenic line B; WF.COP-(D7Rat39-D7Uwm12)/2Uwm
Type: congenic
Available Source: Not Available
Origination: University of Wisconsin, Madison, Wisconsin, USA
Description: Chromosome 7 segment from WKY that had the Mcs2 QTL was introgressed into a WF genetic background
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2781,116,229 - 81,116,402RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0789,265,543 - 89,265,715RGD_MAPPER_PIPELINERnor6.0
Rnor_5.076,276,388 - 89,299,904RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.474,936,703 - 86,007,499RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mammary tumor number

References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6. Sanders J, etal., PLoS One. 2011;6(5):e19891. Epub 2011 May 18.

Region

Position Markers

Flank 1 / 1 (D7Rat39)
Rat AssemblyChrPosition (strand)Source
Rnor_5.076,276,388 - 6,276,532UniSTS
Rnor_5.077,121,490 - 7,121,634UniSTS
RGSC_v3.476,538,094 - 6,538,266RGD
RGSC_v3.474,936,703 - 4,936,848RGD
RGSC_v3.476,538,095 - 6,538,266UniSTS
RGSC_v3.474,936,704 - 4,936,848UniSTS
RGSC_v3.176,538,094 - 6,538,266RGD
Celera73,395,904 - 3,396,048UniSTS
SHRSP x BN Map72.33UniSTS
SHRSP x BN Map72.33RGD

Flank 2 / 1 (D7Uwm12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2781,116,229 - 81,116,402 (+)MAPPER
Rnor_6.0789,265,543 - 89,265,715NCBI
Rnor_5.0789,299,732 - 89,299,904UniSTS
RGSC_v3.4786,007,326 - 86,007,499RGD
RGSC_v3.4786,007,327 - 86,007,499UniSTS
RGSC_v3.1786,028,056 - 86,028,229RGD
Celera778,005,550 - 78,005,722UniSTS
Cytogenetic Map7 RGD

Additional Information