Strain Report - Rat Genome Database

Name: WF.COP-( D7Rat39-D7Uwm12 )/1Uwm
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: WF.COP-(D7Rat39-D7Uwm12)/1Uwm

Symbol:

WF.COP-(D7Rat39-D7Uwm12)/1Uwm

Strain:

WF.COP-(D7Rat39-D7Uwm12)/1

Substrain:

Uwm

RGD ID:

5134951

Citation ID:

RRID:RGD_5134951

Ontology ID:

RS:0002609

Previously known as:

WF.COP-(D7Rat39-D7Uwm12)/1Uwm; WF.COP congenic line A

Type:

congenic

Source:

University of Wisconsin, Madison, Wisconsin, USA

Origin:

Chromosome 7 segment from WKY that had the Mcs2 QTL was introgressed into a WF genetic background

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	81,116,229 - 81,116,402	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	7	89,265,543 - 89,265,715	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	7	6,276,388 - 89,299,904	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	7	4,936,703 - 86,007,499	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Mammary Neoplasms (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased mammary gland tumor incidence (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

mammary tumor number

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6.	Sanders J, etal., PLoS One. 2011;6(5):e19891. Epub 2011 May 18.

Region

Position Markers

Flank 1 / 1 (D7Rat39)

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	7	6,276,388 - 6,276,532	UniSTS
Rnor_5.0	7	7,121,490 - 7,121,634	UniSTS
RGSC_v3.4	7	6,538,094 - 6,538,266	RGD
RGSC_v3.4	7	4,936,703 - 4,936,848	RGD
RGSC_v3.4	7	6,538,095 - 6,538,266	UniSTS
RGSC_v3.4	7	4,936,704 - 4,936,848	UniSTS
RGSC_v3.1	7	6,538,094 - 6,538,266	RGD
Celera	7	3,395,904 - 3,396,048	UniSTS
SHRSP x BN Map	7	2.33	UniSTS
SHRSP x BN Map	7	2.33	RGD

Flank 2 / 1 (D7Uwm12)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	81,116,229 - 81,116,402 (+)	MAPPER
Rnor_6.0	7	89,265,543 - 89,265,715	NCBI
Rnor_5.0	7	89,299,732 - 89,299,904	UniSTS
RGSC_v3.4	7	86,007,326 - 86,007,499	RGD
RGSC_v3.4	7	86,007,327 - 86,007,499	UniSTS
RGSC_v3.1	7	86,028,056 - 86,028,229	RGD
Celera	7	78,005,550 - 78,005,722	UniSTS
Cytogenetic Map	7		RGD

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2011-07-06	WF.COP-(D7Rat39-D7Uwm12)/1Uwm	WF.COP-(D7Rat39-D7Uwm12)/Uwm	Symbol updated	68687	APPROVED
2011-07-06	WF.COP-(D7Rat39-D7Uwm12)/1Uwm	WF.COP-(D7Rat39-D7Uwm12)/Uwm	Name updated	68913	APPROVED
2011-07-06	WF.COP-(D7Rat39-D7Uwm12)/1Uwm	WF.COP-(D7Rat39-D7Uwm12)/Uwm	Symbol updated	68687	APPROVED
2011-07-06	WF.COP-(D7Rat39-D7Uwm12)/1Uwm	WF.COP-(D7Rat39-D7Uwm12)/Uwm	Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: WF.COP-(D7Rat39-D7Uwm12)/1Uwm

Mammalian Phenotype

Related Phenotype Data for Term "WF.COP-(D7Rat39-D7Uwm12)/1Uwm" (RS:0002609)