Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS-Mstnem3Mcwi

Symbol: SS-Mstnem3Mcwi
Strain: SS-Mstnem3
Substrain: Mcwi
RGD ID: 5131964
Citation ID: RRID:RGD_5131964
Ontology ID: RS:0002593
Alleles: Mstnem3Mcwi
Also Known As: SS-Mstnem3Mcwi; SS-Mstn^[em3Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTTATTCCTTTGCAGCTGActttctAATGCAAGCGGATGGA into SS/JrHsdMcwi rat embryos. The resulting mutation is an 8-bp frameshift deletion in exon 2.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,456,663 - 48,456,670RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0953,310,977 - 53,315,804RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0952,977,371 - 52,982,198RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4945,426,831 - 45,431,658RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Mstnem3Mcwi-var1 chr9 48456663 48456670 TTAGAAAG - deletion mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Mstnem3Mcwi    SS-Mstnem3Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Mstnem3Mcwi    SS-Mstnem3Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Mstnem3Mcwi    SS-Mstnem3Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Mstnem3Mcwi    SS-Mstnem3Mcwi    Symbol updated 68687 APPROVED
2013-08-13 SS-Mstnem3Mcwi    SS-Mstnem3Mcwi    Name updated 68913 APPROVED