Strain Report - Rat Genome Database

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Strain: SS-Msraem3Mcwi

Symbol: SS-Msraem3Mcwi
Strain: SS-Msraem3
Substrain: Mcwi
RGD ID: 5131950
Citation ID: RRID:RGD_5131950
Ontology ID: RS:0002587
Alleles: Msraem3Mcwi
Also Known As: SS-Msraem3Mcwi; SS-Msra^[em3Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTCATCTTCGAAGGTCatcagcGCGGAGGAAGCT into SS/JrHsdMcwi rat embryos. The resulting mutation is an 18-bp frameshift deletion in exon 1.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21538,676,395 - 38,676,412RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01547,488,333 - 47,800,662RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01551,307,920 - 51,550,758RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41543,509,775 - 43,756,283RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Msraem3Mcwi-var1 chr15 38676395 38676412 GCGCTGATGACCTTCGAA - deletion mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-25 SS-Msraem3Mcwi    SS-Msraem3Mcwi    Name updated 68913 APPROVED
2014-03-25 SS-Msraem3Mcwi    SS-Msraem3Mcwi    Symbol updated 68687 APPROVED
2014-03-25 SS-Msraem3Mcwi    SS-Msraem3Mcwi    Name updated 68913 APPROVED
2014-03-25 SS-Msraem3Mcwi    SS-Msraem3Mcwi    Symbol updated 68687 APPROVED
2013-08-13 SS-Msraem3Mcwi    SS-Msraem3Mcwi    Name updated 68913 APPROVED