Strain Report - Rat Genome Database

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Strain: SS.BN-(D6Rat119-D6Arb3)/Mcwi

Symbol: SS.BN-(D6Rat119-D6Arb3)/Mcwi
Strain: SS.BN-(D6Rat119-D6Arb3)
Substrain: Mcwi
RGD ID: 4145088
Citation ID: RRID:RGD_4145088
Ontology ID: RS:0002478
Previously known as: SS.BN-(D6Rat119-D6RatArb3)/Mcwi;SS.BN-(D6Rat119-D6RatArb3)/Mcwi;SS.BN-(D6Rat119-D6Arb3)/Mcwi; SS.BN-(D6Rat119-D6Arb3)/Mcwi
Type: congenic
Source: Medical College of Wisconsin, Milwaukee, Wisconsin
Origin: SS/JrHsdMcwi were crossed with SS-6BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26106,752,656 - 132,339,866RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.06111,134,524 - 138,065,254RGD_MAPPER_PIPELINERnor6.0
Rnor_5.06120,420,333 - 147,057,860RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.46111,239,053 - 138,260,635RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique. Adamovic T, et al., Genes Chromosomes Cancer. 2010 Nov;49(11):1035-45.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D6Rat119)
Rat AssemblyChrPosition (strand)Source
mRatBN7.26106,752,656 - 106,752,806 (+)MAPPER
Rnor_6.06111,134,524 - 111,134,673NCBI
Rnor_5.06120,420,333 - 120,420,482UniSTS
RGSC_v3.46111,239,280 - 111,239,429UniSTS
RGSC_v3.46111,239,053 - 111,239,430RGD
RGSC_v3.16111,242,584 - 111,242,961RGD
Celera6104,573,956 - 104,574,105UniSTS
RH 3.4 Map6748.99RGD
RH 3.4 Map6748.99UniSTS
RH 2.0 Map61001.2RGD
SHRSP x BN Map664.5898RGD

Flank 2 / 1 (D6Arb3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.26132,339,579 - 132,339,866 (+)MAPPER
Rnor_6.06138,064,968 - 138,065,254NCBI
Rnor_5.06147,057,574 - 147,057,860UniSTS
RGSC_v3.46138,260,348 - 138,260,635RGD
RGSC_v3.46138,260,349 - 138,260,635UniSTS
RGSC_v3.16138,266,535 - 138,266,822RGD
Celera6129,870,923 - 129,871,209UniSTS
RH 3.4 Map6783.0UniSTS
RH 3.4 Map6783.0RGD
RH 2.0 Map61125.3RGD
SHRSP x BN Map683.0399RGD
Cytogenetic Map6q32UniSTS
Strain QTL Data
Symbol Name Trait
Mcs26 Mammary carcinoma susceptibility QTL 26 mammary gland integrity trait   (VT:0010552)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics This region does not have the DMBA toxicity QTL. 4143380
strain_life_disease These survive the carcinogen treatment and developed tumors. 4143380