Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: BN.GK-(D2Rat40-D2Wox35)/Ox

Symbol: BN.GK-(D2Rat40-D2Wox35)/Ox
Strain: BN.GK-(D2Rat40-D2Wox35)
Substrain: Ox
RGD ID: 4143457
Citation ID: RRID:RGD_4143457
Ontology ID: RS:0002465
Previously known as: BN.GK2e;BN.GK-(D2Rat40-D2Wox35)/Ox; BN.GK-(D2Rat40-D2Wox35)/Ox
Type: congenic
Source: The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK
Origin: This congenic strain is derived from GK rats which were from a colony in Paris (CNRS) obtained in 1995. BN rats were initially obtained from Charles River Laboratories, Margate, UK.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22157,142,078 - 157,142,209RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02169,852,670 - 244,719,662RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02189,197,858 - 189,197,988RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42163,154,227 - 163,154,358RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Quantitative trait locus dissection in congenic strains of the Goto-Kakizaki rat identifies a region conserved with diabetes loci in human chromosome 1q. Wallace KJ, etal., Physiol Genomics 2004 Sep 16;19(1):1-10. Epub 2004 Jul 20.


Position Markers

Flank 1 / 1 (D2Rat40)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22157,142,078 - 157,142,209 (+)MAPPER
Rnor_6.02169,852,670 - 169,852,800NCBI
Rnor_5.02189,197,858 - 189,197,988UniSTS
RGSC_v3.42163,154,227 - 163,154,358RGD
RGSC_v3.42163,154,228 - 163,154,358UniSTS
RGSC_v3.12163,104,191 - 163,104,321RGD
Celera2151,402,589 - 151,402,703UniSTS
RH 3.4 Map21025.6UniSTS
RH 3.4 Map21025.6RGD
RH 2.0 Map2778.0RGD
SHRSP x BN Map266.0998RGD
FHH x ACI Map269.9399RGD

Flank 2 / 1 (D2Wox35)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02244,719,535 - 244,719,662NCBI
Celera2220,080,002 - 220,080,134UniSTS
RH 3.4 Map21576.4RGD
RH 3.4 Map21576.4UniSTS
Cytogenetic Map2q44UniSTS

Additional Information