Strain Report - Rat Genome Database

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Strain: SS.LEW-(D10Got112-Igfbp4)/Ayd

Symbol: SS.LEW-(D10Got112-Igfbp4)/Ayd
Strain: SS.LEW-(D10Got112-Igfbp4)
Substrain: Ayd
RGD ID: 2325798
Citation ID: RRID:RGD_2325798
Ontology ID: RS:0002417
Previously known as: SS.LEW-(D10Got112-Igfbp4)/Ayd; DSS.LEW-(D10Got112-Igfbp4)/Lt; C10S.L25
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A sub congenic strain derived from the progenitor strain SS.LEW-(D10Rat27-Igfbp4)/Ayd
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21076,246,085 - 84,007,272RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01078,970,279 - 86,962,563RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01078,816,241 - 86,759,484RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41079,857,808 - 87,834,315RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Distinct genomic replacements from Lewis correct diastolic dysfunction, attenuate hypertension, and reduce left ventricular hypertrophy in Dahl salt-sensitive rats. Deng AY, etal., J Hypertens. 2008 Oct;26(10):1935-1943.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Got112)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21076,246,085 - 76,246,212 (+)MAPPER
Rnor_6.01078,970,279 - 78,970,405NCBI
Rnor_5.01078,816,241 - 78,816,367UniSTS
RGSC_v3.41079,857,808 - 79,857,935RGD
RGSC_v3.41079,857,809 - 79,857,935UniSTS
RGSC_v3.11079,872,179 - 79,872,305RGD
Celera1075,125,614 - 75,125,740UniSTS
RH 3.4 Map10708.2UniSTS
RH 3.4 Map10708.2RGD
RH 2.0 Map10825.4RGD

Flank 2 / 1 (Igfbp4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21083,995,253 - 84,007,272 (+)NCBI
mRatBN7.2 Ensembl1083,989,591 - 84,007,225 (+)Ensembl
UTH_Rnor_SHR_Utx1088,939,170 - 88,951,179 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01088,437,283 - 88,449,292 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01083,829,446 - 83,841,461 (+)NCBI
Rnor_6.01086,950,555 - 86,962,563 (+)NCBI
Rnor_6.0 Ensembl1086,950,557 - 86,962,578 (+)Ensembl
Rnor_5.01086,747,476 - 86,759,484 (+)NCBI
RGSC_v3.41087,822,429 - 87,834,315 (+)NCBI
RGSC_v3.11087,836,798 - 87,848,684 (+)NCBI
Celera1082,736,335 - 82,748,330 (+)NCBI
RH 3.4 Map10860.1RGD
Cytogenetic Map10q31NCBI
Strain QTL Data
Symbol Name Trait
Bp346 Blood pressure QTL 346 arterial blood pressure trait   (VT:2000000)    

Additional Information