Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini

Symbol: DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini
Strain: DA.PVG.1AV1-(D4Rat103-D4Mit12)
Substrain: Kini
RGD ID: 2317596
Citation ID: RRID:RGD_2317596
Ontology ID: RS:0002387
Previously known as: R11; DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini; DA.PVG.1AV1-(D4Rat108-D4Rat233)/Kini; DA.PVG-(D4Rat108-D4Rat233)
Type: congenic
Source: Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden
Origin: Congenic substrain established by intercrossing DA.PVG.1AV1-(D4Rat155-Spr) with parental DA/Kini
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2483,428,419 - 103,194,984RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0484,475,257 - 99,067,150RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04149,135,946 - 163,844,298RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4482,700,691 - 104,416,171RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View


Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat. Abdelmagid N, etal., PLoS Pathog. 2012;8(6):e1002753. doi: 10.1371/journal.ppat.1002753. Epub 2012 Jun 28.
2. TNF production in macrophages is genetically determined and regulates inflammatory disease in rats. Gillett A, etal., J Immunol. 2010 Jul 1;185(1):442-50. doi: 10.4049/jimmunol.0904101. Epub 2010 May 26.
3. Multiple loci comprising immune-related genes regulate experimental neuroinflammation. Marta M, etal., Genes Immun. 2010 Jan;11(1):21-36. Epub 2009 Aug 13.
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat103)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2483,428,419 - 83,428,649 (+)MAPPER
Rnor_6.0484,475,257 - 84,475,486NCBI
Rnor_5.04149,135,946 - 149,136,175UniSTS
RGSC_v3.4482,700,691 - 82,700,921RGD
RGSC_v3.4482,700,692 - 82,700,921UniSTS
RGSC_v3.1482,985,313 - 82,985,543RGD
Celera478,304,079 - 78,304,308UniSTS
SHRSP x BN Map441.93RGD
SHRSP x BN Map441.93UniSTS

Flank 2 / 1 (D4Mit12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24103,194,805 - 103,194,984 (+)MAPPER
Rnor_6.0499,066,972 - 99,067,150NCBI
Rnor_5.04163,844,120 - 163,844,298UniSTS
RGSC_v3.44104,415,992 - 104,416,171RGD
RGSC_v3.44104,415,993 - 104,416,171UniSTS
RGSC_v3.14104,660,473 - 104,660,652RGD
Celera492,370,739 - 92,370,917UniSTS
SHRSP x BN Map448.75UniSTS
SHRSP x BN Map448.75RGD
FHH x ACI Map460.18RGD
Cytogenetic Map4q32UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease When infected in the whiskers area with 2X106 PFU of HSV-1, incidence of Herpes simplex encephalitis (HSE) similar to DA/Kini were observed 7240516

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini    DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini    Name updated 68913 APPROVED
2013-08-28 DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini    DA.PVG.1AV1-(D4Rat103-D4Mit12)/Kini    Name updated 68913 APPROVED