Strain Report - Rat Genome Database

Name: DA.PVG.1AV1-( D4Rat23-D4Mit12 )/Kini
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini

Symbol:

DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini

Strain:

DA.PVG.1AV1-(D4Rat23-D4Mit12)

Substrain:

Kini

RGD ID:

2317595

Citation ID:

RRID:RGD_2317595

Ontology ID:

RS:0002386

Previously known as:

R3; DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini

Type:

congenic

Source:

Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden

Origin:

Congenic substrain established by intercrossing DA.PVG.1AV1-(D4Rat155-Spr) with parental DA/Kini

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,194,805 - 103,194,984	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	4	99,066,972 - 99,067,150	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	4	58,518,376 - 163,844,298	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	4	58,550,170 - 104,416,171	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Autoimmune Encephalomyelitis (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased susceptibility to experimental autoimmune encephalomyelitis (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

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Clinical Measurement

percentage of study population developing experimental autoimmune encephalomyelitis during a period of time

post-insult time to onset of experimental autoimmune encephalomyelitis

experimental autoimmune encephalomyelitis duration

References

References - curated

#	Reference Title	Reference Citation
1.	Multiple loci comprising immune-related genes regulate experimental neuroinflammation.	Marta M, etal., Genes Immun. 2010 Jan;11(1):21-36. Epub 2009 Aug 13.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat23)

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	4	58,518,376 - 58,518,669	NCBI
Rnor_5.0	4	58,518,430 - 58,518,579	NCBI
RGSC_v3.4	4	58,550,224 - 58,550,372	UniSTS
RGSC_v3.4	4	58,550,170 - 58,550,462	RGD
RGSC_v3.1	4	58,826,300 - 58,826,592	RGD
Celera	4	55,163,661 - 55,163,809	UniSTS
RH 3.4 Map	4	354.6	RGD
RH 3.4 Map	4	354.6	UniSTS
RH 2.0 Map	4	381.6	RGD
SHRSP x BN Map	4	32.83	RGD
Cytogenetic Map	4	q22	UniSTS

Flank 2 / 1 (D4Mit12)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,194,805 - 103,194,984 (+)	MAPPER
Rnor_6.0	4	99,066,972 - 99,067,150	NCBI
Rnor_5.0	4	163,844,120 - 163,844,298	UniSTS
RGSC_v3.4	4	104,415,992 - 104,416,171	RGD
RGSC_v3.4	4	104,415,993 - 104,416,171	UniSTS
RGSC_v3.1	4	104,660,473 - 104,660,652	RGD
Celera	4	92,370,739 - 92,370,917	UniSTS
SHRSP x BN Map	4	48.75	UniSTS
SHRSP x BN Map	4	48.75	RGD
FHH x ACI Map	4	60.18	RGD
Cytogenetic Map	4	q32	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-28	DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini		DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini		Name updated	68913	APPROVED
2013-08-28	DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini		DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini

Mammalian Phenotype

Related Phenotype Data for Term "DA.PVG.1AV1-(D4Rat23-D4Mit12)/Kini" (RS:0002386)