Strain Report - Rat Genome Database

Name: SBH.SBN-( D1Rat137-D1Rat123 )/Ygl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SBH.SBN-(D1Rat137-D1Rat123)/Ygl

Symbol:

SBH.SBN-(D1Rat137-D1Rat123)/Ygl

Strain:

SBH.SBN-(D1Rat137-D1Rat123)

Substrain:

Ygl

RGD ID:

2314494

Citation ID:

RRID:RGD_2314494

Ontology ID:

RS:0002112

Previously known as:

SBH.SBN-(D1Rat137-D1Rat123)Ygl;SBH/y.SBN/y-(D1Rat137-D1Rat123);Y^SBH/y;YSBH/y;Line 4; SBH.SBN-(D1Rat137-D1Rat123)/Ygl

Type:

congenic

Source:

Ben Gurion University Barzilai Medical Center, Ashkelon, Israel

Origin:

Segment of interest from chr 1 of SBN/Ygl was introgressed onto the genetic background of SBH/Ygl this was done by crossing male SBH/Ygl with female SBN/Ygl fixing the Y chr to SBN/Ygl

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	90,532,338 - 218,108,781	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	94,225,372 - 238,220,385	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	1	95,325,941 - 245,519,018	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	1	90,306,033 - 223,729,371	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased systemic arterial systolic blood pressure (IMP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Clinical Measurement

systolic blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Congenic strains confirm the presence of salt-sensitivity QTLs on chromosome 1 in the Sabra rat model of hypertension.	Yagil C, etal., Physiol Genomics 2003 Jan 15;12(2):85-95.

Region

Position Markers

Flank 1 / 1 (D1Rat137)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	90,532,338 - 90,532,583 (+)	MAPPER
Rnor_6.0	1	94,225,372 - 94,225,616	NCBI
Rnor_5.0	1	95,325,941 - 95,326,185	UniSTS
RGSC_v3.4	1	90,306,033 - 90,306,478	RGD
RGSC_v3.4	1	90,306,035 - 90,306,279	UniSTS
RGSC_v3.1	1	90,384,146 - 90,384,390	RGD
Celera	1	84,867,135 - 84,867,379	UniSTS
RH 3.4 Map	1	886.1	UniSTS
RH 3.4 Map	1	886.1	RGD
RH 2.0 Map	1	582.2	RGD
SHRSP x BN Map	1	45.6999	RGD
FHH x ACI Map	1	48.9499	RGD

Flank 2 / 1 (D1Rat123)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	218,108,584 - 218,108,781 (+)	MAPPER
Rnor_6.0	1	238,220,189 - 238,220,385	NCBI
Rnor_5.0	1	245,518,822 - 245,519,018	UniSTS
RGSC_v3.4	1	223,729,175 - 223,729,371	UniSTS
RGSC_v3.4	1	223,729,174 - 223,729,371	RGD
RGSC_v3.1	1	223,893,198 - 223,893,394	RGD
Celera	1	215,376,705 - 215,376,901	UniSTS
RH 3.4 Map	9	757.8	RGD
RH 3.4 Map	9	757.8	UniSTS
SHRSP x BN Map	1	116.5799	UniSTS
SHRSP x BN Map	1	116.5799	RGD
FHH x ACI Map	1	106.87	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SBH.SBN-(D1Rat137-D1Rat123)/Ygl

Mammalian Phenotype

Related Phenotype Data for Term "SBH.SBN-(D1Rat137-D1Rat123)/Ygl" (RS:0002112)