Strain Report - Rat Genome Database

Name: SHRSP.WKY-( D1Rat117-D1Rat90 )/IzmTkyo
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo

Symbol:

SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo

Strain:

SHRSP.WKY-(D1Rat117-D1Rat90)

Substrain:

IzmTkyo

RGD ID:

2314246

Citation ID:

RRID:RGD_2314246

Ontology ID:

RS:0002540

Previously known as:

SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo;1pW9;NBRP Rat No: 0545; SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo

Type:

congenic

Source:

National BioResource Project for the Rat in Japan

Origin:

Developed by the Depositor

Coat Color:

Albino

Inbred Generations:

Last Known Status:

Cryopreserved Embryo

Research Usage

Cardio Hypertension

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	213,533,809 - 259,647,894	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	233,490,105 - 281,795,785	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	1	240,604,381 - 289,137,268	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	1	219,629,755 - 267,111,153	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat117)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	213,533,809 - 213,533,942 (+)	MAPPER
Rnor_6.0	1	233,490,105 - 233,490,237	NCBI
Rnor_5.0	1	240,604,381 - 240,604,513	UniSTS
RGSC_v3.4	1	219,629,755 - 219,629,888	RGD
RGSC_v3.4	1	219,629,756 - 219,629,888	UniSTS
RGSC_v3.1	1	219,793,778 - 219,793,911	RGD
RH 2.0 Map	1	1163.3	RGD
FHH x ACI Map	1	102.12	RGD
Cytogenetic Map	1	q43	UniSTS

Flank 2 / 1 (D1Rat90)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	259,647,732 - 259,647,894 (+)	MAPPER
Rnor_6.0	1	281,795,624 - 281,795,785	NCBI
Rnor_5.0	1	289,137,107 - 289,137,268	UniSTS
RGSC_v3.4	1	267,110,926 - 267,111,087	UniSTS
RGSC_v3.4	1	267,110,921 - 267,111,153	RGD
RGSC_v3.1	1	267,322,011 - 267,322,172	RGD
Celera	1	255,291,309 - 255,291,470	UniSTS
RH 3.4 Map	1	1708.8	RGD
RH 3.4 Map	1	1708.8	UniSTS
RH 2.0 Map	1	1313.1999	RGD
SHRSP x BN Map	1	148.15	RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_life_disease	early-onset stroke	1302502
strain_reproduction	Maintained in homozygous condition. Sib mating.	1302502

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-05-29	SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo		SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo		Name updated	68913	APPROVED
2012-05-29	SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo		SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHRSP.WKY-(D1Rat117-D1Rat90)/IzmTkyo