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Strain Registration

General

Strain: DA.WOKW-(D3Mgh5-D3Rat1)/K

Symbol:

DA.WOKW-(D3Mgh5-D3Rat1)/K

Strain:

DA.WOKW-(D3Mgh5-D3Rat1)

Substrain:

RGD ID:

2312647

Citation ID:

RRID:RGD_2312647

Ontology ID:

RS:0001855

Also Known As:

DA.WOKW-(D3Mgh5-D3Rat1)/K;DA.3aW; DA.WOKW-(D3Mgh5-D3Rat1)/K

Type:

congenic

Available Source:

Not Available

Origination:

Dept. of Laboratory Animal Science, University of Greifswald, Karlsburg, Germany

Description:

A cross of DA/K and WOKW/K which resulted in a segment of chr 3 from WOKW/K introgressed in DA/K background

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	98,535,255 - 168,026,850	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	3	103,141,814 - 176,418,101	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	3	109,733,850 - 180,128,021	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	3	97,523,869 - 170,016,653	RGD_MAPPER_PIPELINE	RGSC_v3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased cholesterol level (IAGP)

increased circulating leptin level (IAGP)

increased total body fat amount (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Genes on rat chromosomes 3, 5, 10, and 16 are linked with facets of metabolic syndrome.	Baguhl R, etal., Obesity (Silver Spring). 2009 Jun;17(6):1215-9. Epub 2009 Feb 19.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Mgh5)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	98,535,255 - 98,535,386 (+)	MAPPER
Rnor_6.0	3	103,141,814 - 103,141,944	NCBI
Rnor_5.0	3	109,733,850 - 109,733,980	UniSTS
RGSC_v3.4	3	97,523,869 - 97,524,000	RGD
RGSC_v3.4	3	97,523,870 - 97,524,000	UniSTS
Celera	3	97,537,491 - 97,537,621	UniSTS
RGSC_v3.1	3	97,420,298 - 97,420,428	RGD
RH 3.4 Map	3	781.29	RGD
RH 3.4 Map	3	781.29	UniSTS
Cytogenetic Map	3	q34	UniSTS

Flank 2 / 1 (D3Rat1)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	168,026,691 - 168,026,850 (+)	MAPPER
Rnor_6.0	3	176,417,943 - 176,418,101	NCBI
Rnor_5.0	3	180,127,863 - 180,128,021	UniSTS
RGSC_v3.4	3	170,016,309 - 170,016,467	UniSTS
RGSC_v3.4	3	170,016,252 - 170,016,653	RGD
Celera	3	164,558,222 - 164,558,366	UniSTS
RGSC_v3.1	3	169,922,345 - 169,922,503	RGD
RH 3.4 Map	3	1533.2	RGD
RH 3.4 Map	3	1533.2	UniSTS
RH 2.0 Map	3	1027.1	RGD
SHRSP x BN Map	3	91.5299	RGD
FHH x ACI Map	3	104.89	RGD
Cytogenetic Map	3	q43	UniSTS

Strain QTL Data

Symbol	Name	Trait
Bw94	Body weight QTL 94	inguinal fat pad mass (VT:0010424)
Scl63	Serum cholesterol level QTL 63	blood cholesterol amount (VT:0000180)
Slep7	Serum leptin concentration QTL 7	blood leptin amount (VT:0005667)

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_other	These are homozygous for WOKW/K alleles on loci D3Mgh1, D3Mit3, and D3Mgh5	2312642

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.WOKW-(D3Mgh5-D3Rat1)/K

Mammalian Phenotype