Strain Report - Rat Genome Database

Name: SHR.BN-( D18Rat40-D18Rat82 )/Ipcv
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SHR.BN-(D18Rat40-D18Rat82)/Ipcv

Symbol:

SHR.BN-(D18Rat40-D18Rat82)/Ipcv

Strain:

SHR.BN-(D18Rat40-D18Rat82)

Substrain:

Ipcv

RGD ID:

2312579

Citation ID:

RRID:RGD_2312579

Ontology ID:

RS:0002150

Previously known as:

SHR.BN-(D18Rat40-D18Rat82)/Ipcv;SHR.BN-D18Rat40/D18Rat82)/Ipcv;SHR.BN-D18Rat82/D18Rat40;SHR-18B; SHR.BN-(D18Rat40-D18Rat82)/Ipcv

Type:

congenic

Source:

Czech Academy of Sciences, Prague, Czech Republic

Origin:

F₂ rats from SHR x SHR.BN-(D18Rat113-D18Rat82)/Ipcv were genotyped and backcrossed with SHR/OlaIpcv and segment of interest fixed by intercrossing heterozygotes to get homozygosity

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	59,330,409 - 70,263,868	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	18	61,499,531 - 73,016,546	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	18	60,695,794 - 72,695,235	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	18	62,106,066 - 73,666,623	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased systemic arterial diastolic blood pressure (IAGP)

decreased systemic arterial systolic blood pressure (IAGP)

increased systemic arterial diastolic blood pressure (IAGP)

increased systemic arterial systolic blood pressure (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Dissection of chromosome 18 blood pressure and salt-sensitivity quantitative trait loci in the spontaneously hypertensive rat.	Johnson MD, etal., Hypertension. 2009 Sep;54(3):639-45. Epub 2009 Jul 20.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D18Rat40)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	59,330,409 - 59,330,563 (+)	MAPPER
Rnor_6.0	18	61,499,531 - 61,499,684	NCBI
Rnor_5.0	18	60,695,794 - 60,695,947	UniSTS
RGSC_v3.4	18	62,106,067 - 62,106,220	UniSTS
RGSC_v3.4	18	62,106,066 - 62,106,220	RGD
RGSC_v3.1	18	62,179,268 - 62,179,421	RGD
Celera	18	57,453,190 - 57,453,343	UniSTS
RH 3.4 Map	18	572.4	RGD
RH 3.4 Map	18	572.4	UniSTS
RH 2.0 Map	18	323.3	RGD
SHRSP x BN Map	18	31.9599	RGD
FHH x ACI Map	18	41.88	RGD
Cytogenetic Map	18	q12.1	UniSTS

Flank 2 / 1 (D18Rat82)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	70,263,698 - 70,263,868 (+)	MAPPER
Rnor_6.0	18	73,016,379 - 73,016,546	NCBI
Rnor_5.0	18	72,695,068 - 72,695,235	UniSTS
RGSC_v3.4	18	73,666,205 - 73,666,623	RGD
RGSC_v3.4	18	73,666,389 - 73,666,556	UniSTS
RGSC_v3.1	18	73,739,662 - 73,739,829	RGD
Celera	18	68,791,744 - 68,791,911	UniSTS
RH 3.4 Map	18	718.1	UniSTS
RH 3.4 Map	18	718.1	RGD
RH 2.0 Map	18	155.5	RGD
SHRSP x BN Map	18	44.4299	RGD
Cytogenetic Map	18		RGD

Strain QTL Data

Symbol	Name	Trait
Bp341	Blood pressure QTL 341	arterial blood pressure trait (VT:2000000)

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHR.BN-(D18Rat40-D18Rat82)/Ipcv

Mammalian Phenotype