Strain Report - Rat Genome Database

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Strain: SHR.BN-(D18Rat40-D18Rat82)/Ipcv

Symbol: SHR.BN-(D18Rat40-D18Rat82)/Ipcv
Strain: SHR.BN-(D18Rat40-D18Rat82)
Substrain: Ipcv
RGD ID: 2312579
Citation ID: RRID:RGD_2312579
Ontology ID: RS:0002150
Previously known as: SHR.BN-(D18Rat40-D18Rat82)/Ipcv;SHR.BN-D18Rat40/D18Rat82)/Ipcv;SHR.BN-D18Rat82/D18Rat40;SHR-18B; SHR.BN-(D18Rat40-D18Rat82)/Ipcv
Type: congenic
Source: Czech Academy of Sciences, Prague, Czech Republic
Origin: F2 rats from SHR x SHR.BN-(D18Rat113-D18Rat82)/Ipcv were genotyped and backcrossed with SHR/OlaIpcv and segment of interest fixed by intercrossing heterozygotes to get homozygosity
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21859,330,409 - 70,263,868RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01861,499,531 - 73,016,546RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01860,695,794 - 72,695,235RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41862,106,066 - 73,666,623RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. Dissection of chromosome 18 blood pressure and salt-sensitivity quantitative trait loci in the spontaneously hypertensive rat. Johnson MD, etal., Hypertension. 2009 Sep;54(3):639-45. Epub 2009 Jul 20.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D18Rat40)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21859,330,409 - 59,330,563 (+)MAPPER
Rnor_6.01861,499,531 - 61,499,684NCBI
Rnor_5.01860,695,794 - 60,695,947UniSTS
RGSC_v3.41862,106,067 - 62,106,220UniSTS
RGSC_v3.41862,106,066 - 62,106,220RGD
RGSC_v3.11862,179,268 - 62,179,421RGD
Celera1857,453,190 - 57,453,343UniSTS
RH 3.4 Map18572.4RGD
RH 3.4 Map18572.4UniSTS
RH 2.0 Map18323.3RGD
SHRSP x BN Map1831.9599RGD
FHH x ACI Map1841.88RGD
Cytogenetic Map18q12.1UniSTS

Flank 2 / 1 (D18Rat82)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21870,263,698 - 70,263,868 (+)MAPPER
Rnor_6.01873,016,379 - 73,016,546NCBI
Rnor_5.01872,695,068 - 72,695,235UniSTS
RGSC_v3.41873,666,205 - 73,666,623RGD
RGSC_v3.41873,666,389 - 73,666,556UniSTS
RGSC_v3.11873,739,662 - 73,739,829RGD
Celera1868,791,744 - 68,791,911UniSTS
RH 3.4 Map18718.1UniSTS
RH 3.4 Map18718.1RGD
RH 2.0 Map18155.5RGD
SHRSP x BN Map1844.4299RGD
Cytogenetic Map18 RGD
Strain QTL Data
Symbol Name Trait
Bp341 Blood pressure QTL 341 arterial blood pressure trait   (VT:2000000)    

Additional Information