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Strain Registration

Strain: DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd

Symbol: DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd
Strain: DA.LEW.RT1f-(D20Wox15-D20Wox13)
Substrain: Rhd
RGD ID: 2307301
Citation ID: RRID:RGD_2307301
Ontology ID: RS:0001847
Also Known As: DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd; DA.I F- male rat Swe spleen; MDC-03-18; DA.I F; DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd
Type: congenic
Available Source: Not Available
Origination: Section for Medical Inflammation Research, Biomedical Center, Lund University, Sweden
Description: RT1f Haplotype on DA background, congenic strain was obtained by conventional backcross breeding to the parental DA/Ztm from LEW.1F/Ztm with positive selection of microsatellite markers
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,646,407 - 6,515,143RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0203,151,827 - 8,034,632RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0205,249,993 - 10,234,922RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4202,790,524 - 6,695,696RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
DA.LEW.RT1f-(D20Wox15-D20Wox13)/RhdRatDA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd  IEA 7241799 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
DA.LEW.RT1f-(D20Wox15-D20Wox13)/RhdRatT cell selection trait  EXP 7175101 RGD 


References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. SNP and haplotype mapping for genetic analysis in the rat. Saar K, etal., Nat Genet. 2008 May;40(5):560-6.
3. Class II major histocompatibility complex-associated response to type XI collagen regulates the development of chronic arthritis in rats. Tuncel J, etal., Arthritis Rheum. 2012 Aug;64(8):2537-47. doi: 10.1002/art.34461.

Region

Position Markers

Flank 1 / 1 (D20Wox15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,646,407 - 2,646,531 (+)MAPPER
mRatBN7.2202,666,507 - 2,666,629 (+)MAPPER
Rnor_6.0203,171,923 - 3,172,044NCBI
Rnor_6.0203,151,827 - 3,151,950NCBI
Rnor_5.0205,270,089 - 5,270,210UniSTS
Rnor_5.0205,249,993 - 5,250,116UniSTS
RGSC_v3.4202,811,421 - 2,811,542UniSTS
RGSC_v3.4202,790,524 - 2,790,647UniSTS
Celera2076,882 - 77,005UniSTS
Celera2096,923 - 97,044UniSTS
Cytogenetic Map20 RGD

Flank 2 / 1 (D20Wox13)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,514,977 - 6,515,143 (+)MAPPER
Rnor_6.0208,034,467 - 8,034,632NCBI
Rnor_5.02010,234,757 - 10,234,922UniSTS
RGSC_v3.4206,695,531 - 6,695,696UniSTS
Celera208,071,384 - 8,071,549UniSTS
Cytogenetic Map20p12UniSTS
Strain QTL Data
Symbol Name Trait
Tcs1 T cell selection QTL 1 T cell selection trait   (VT:0004917)    
Tcs2 T cell selection QTL 2 T cell selection trait   (VT:0004917)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd    DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd    Name updated 68913 APPROVED
2014-07-01 DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd    DA.LEW.RT1f-(D20Wox15-D20Wox13)/Rhd    Name updated 68913 APPROVED