Strain Report - Rat Genome Database

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Strain: SHRSR.SHRSP-(D1Rat134-Mt1-ps1)/Bbb

Symbol: SHRSR.SHRSP-(D1Rat134-Mt1-ps1)/Bbb
Strain: SHRSR.SHRSP-(D1Rat134-Mt1-ps1)
Substrain: Bbb
RGD ID: 2307161
Citation ID: RRID:RGD_2307161
Ontology ID: RS:0002193
Previously known as: SHRsr.SHRsp-(D1Rat134-Mt1pa); SHRSR.SHRSP-(D1Rat134-Mt1pa)/Bbb; MDC-03-48; Stroke congenic IC; SHRSR.SHRSP-(D1Rat134-Mt1-ps1)/Bbb; SHRSR.SHRSP-(D1Rat134-Mt1-ps1)/Bbb
Type: congenic
Source: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Origin: SHRSP were crossed with SHRSR to give heterozygous F2 animals, these were backcrossed and heterozygotes with desired segment of interest selected and backcrossed to fix the allele of interest
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,634,986 - 181,133,270RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01141,429,089 - 197,963,072RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01142,390,027 - 204,941,832RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41135,467,526 - 185,690,396RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
proteinuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Reciprocal congenic lines for a major stroke QTL on rat chromosome 1. Rubattu S, etal., Physiol Genomics. 2006 Oct 11;27(2):108-13. Epub 2006 Jul 11.
3. SNP and haplotype mapping for genetic analysis in the rat. Saar K, etal., Nat Genet. 2008 May;40(5):560-6.

Region

Position Markers

Flank 1 / 1 (D1Rat134)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21133,634,986 - 133,635,219 (+)MAPPER
Rnor_6.01141,429,089 - 141,429,321NCBI
Rnor_5.01142,390,027 - 142,390,259UniSTS
RGSC_v3.41135,467,527 - 135,467,759UniSTS
RGSC_v3.41135,467,526 - 135,467,759RGD
RGSC_v3.11135,545,933 - 135,546,165RGD
Celera1125,698,599 - 125,698,831UniSTS
RH 3.4 Map11063.1RGD
RH 3.4 Map11063.1UniSTS
RH 2.0 Map1691.7RGD
SHRSP x BN Map168.8399RGD
FHH x ACI Map167.73RGD
Cytogenetic Map1q31UniSTS

Flank 2 / 1 (Mt1-ps1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21181,132,896 - 181,133,270 (+)NCBI
UTH_Rnor_SHR_Utx1189,470,813 - 189,471,187 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01196,656,898 - 196,657,272 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01189,337,455 - 189,337,828 (+)NCBI
Rnor_6.01197,962,698 - 197,963,072 (+)NCBI
Rnor_5.01204,941,458 - 204,941,832 (+)NCBI
RGSC_v3.41185,689,821 - 185,690,396 (+)NCBI
RGSC_v3.11185,839,796 - 185,840,277 (+)NCBI
Celera1178,790,910 - 178,791,284 (+)NCBI
RH 2.0 Map1962.0RGD
Cytogenetic Map1q36NCBI

Additional Information