Strain Report - Rat Genome Database

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Strain: SHRSR.SHRSP-(Klk1-D1Mit3)/Bbb

Symbol: SHRSR.SHRSP-(Klk1-D1Mit3)/Bbb
Strain: SHRSR.SHRSP-(Klk1-D1Mit3)
Substrain: Bbb
RGD ID: 2307160
Citation ID: RRID:RGD_2307160
Ontology ID: RS:0002194
Previously known as: SHRsr.SHRsp-(Klk-D1Mit3); SHRSR.SHRSP-(Klk1-D1Mit3)/Bbb; SHRSR.SHRSP-(Klk1-D1Mit3)/Bbb
Type: congenic
Source: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Origin: SHRSP were crossed with SHRSR to give heterozygous F2 animals, these were backcrossed and heterozygotes with desired segment of interest selected and backcrossed to fix the allele of interest
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,378,103 - 144,267,916RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0199,298,965 - 156,446,783RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01100,371,040 - 162,692,800RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4194,355,758 - 146,971,983RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Reciprocal congenic lines for a major stroke QTL on rat chromosome 1. Rubattu S, etal., Physiol Genomics. 2006 Oct 11;27(2):108-13. Epub 2006 Jul 11.

Region

Position Markers

Flank 2 / 1 (D1Mit3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,267,353 - 144,267,490 (-)MAPPER
mRatBN7.21144,267,353 - 144,267,916 (-)MAPPER
Rnor_6.01156,446,647 - 156,446,783NCBI
Rnor_6.01156,446,196 - 156,446,783NCBI
Rnor_5.01162,692,213 - 162,692,800UniSTS
Rnor_5.01162,692,664 - 162,692,800UniSTS
RGSC_v3.41146,971,846 - 146,971,983RGD
RGSC_v3.41146,971,847 - 146,971,983UniSTS
RGSC_v3.11147,050,253 - 147,050,389RGD
Celera1142,487,594 - 142,487,730UniSTS
RH 3.4 Map11128.0UniSTS
RH 3.4 Map11128.0RGD
RH 2.0 Map1740.1RGD
SHRSP x BN Map175.6399RGD
FHH x ACI Map167.73RGD
Cytogenetic Map1 RGD

Flank 1 / 1 (Klk1c12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,378,103 - 94,382,140 (-)NCBI
mRatBN7.2 Ensembl194,378,054 - 94,382,176 (-)Ensembl
UTH_Rnor_SHR_Utx199,763,522 - 99,767,559 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01108,236,147 - 108,240,184 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01101,526,623 - 101,530,654 (-)NCBI
Rnor_6.0199,298,965 - 99,303,048 (-)NCBI
Rnor_6.0 Ensembl199,299,011 - 99,303,048 (-)Ensembl
Rnor_5.01100,371,040 - 100,375,077 (-)NCBI
RGSC_v3.4194,355,758 - 94,359,795 (-)NCBI
RGSC_v3.1194,433,868 - 94,437,906 (-)NCBI
Celera188,645,697 - 88,649,734 (-)NCBI
Cytogenetic Map1q22NCBI

Additional Information