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Strain: SHR.BN-(D2Rat226-D2Rat294)/Jk

Symbol: SHR.BN-(D2Rat226-D2Rat294)/Jk
Strain: SHR.BN-(D2Rat226-D2Rat294)
Substrain: Jk
RGD ID: 2306895
Citation ID: RRID:RGD_2306895
Ontology ID: RS:0002155
Also Known As: SHR.BN2c; SHR.BN-(D2Rat226-D2Rat294)/Jk; SHR.BN-(D2Rat226-D2Rat294)/Jk
Type: congenic
Available Source: Genetica
Origination: Heart Institute (InCor), University of Sao Paulo Medical School, Sao Paulo, Brazil.
Description: Backcross marker-assisted method was used to fix the BN fragment onto SHR genome, once selection was done using markers, male and female were crossed to get homozygous animals
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22164,073,756 - 227,146,641RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02177,680,772 - 243,901,375RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02197,020,226 - 262,435,073RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42170,338,294 - 236,153,712RGD_MAPPER_PIPELINERGSC3.4






Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Congenic strains provide evidence that four mapped loci in chromosomes 2, 4, and 16 influence hypertension in the SHR. Aneas I, etal., Physiol Genomics. 2009 Mar 3;37(1):52-7. Epub 2009 Jan 6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat226)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22164,073,756 - 164,074,002 (+)MAPPER
Rnor_6.02177,680,772 - 177,681,017NCBI
Rnor_5.02197,020,226 - 197,020,471UniSTS
RGSC_v3.42170,338,294 - 170,338,540RGD
RGSC_v3.42170,338,295 - 170,338,540UniSTS
RGSC_v3.12170,288,281 - 170,288,707RGD
Celera2158,172,109 - 158,172,348UniSTS
SHRSP x BN Map269.1098RGD
SHRSP x BN Map269.1098UniSTS

Flank 2 / 1 (D2Rat294)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22227,146,480 - 227,146,641 (+)MAPPER
Rnor_6.02243,901,215 - 243,901,375NCBI
Rnor_5.02262,434,913 - 262,435,073UniSTS
RGSC_v3.42236,153,361 - 236,153,712RGD
RGSC_v3.42236,153,374 - 236,153,534UniSTS
RGSC_v3.12236,140,114 - 236,140,274RGD
Celera2219,301,590 - 219,301,750UniSTS
RH 3.4 Map21606.1UniSTS
RH 3.4 Map21606.1RGD
RH 2.0 Map21176.8RGD
SHRSP x BN Map297.6098RGD
FHH x ACI Map2110.7499RGD
Strain QTL Data
Symbol Name Trait
Bp337 Blood pressure QTL 337 arterial blood pressure trait   (VT:2000000)    

Additional Information