Strain Report - Rat Genome Database

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Strain: SHR.BN-(D4Rat33-D4Rat54)/Jk

Symbol: SHR.BN-(D4Rat33-D4Rat54)/Jk
Strain: SHR.BN-(D4Rat33-D4Rat54)
Substrain: Jk
RGD ID: 2306894
Citation ID: RRID:RGD_2306894
Ontology ID: RS:0002156
Also Known As: SHR.BN4; SHR.BN-(D4Rat33-D4Rat54)/Jk; SHR.BN-(D4Rat33-D4Rat54)/Jk
Type: congenic
Available Source: Genetica
Origination: Heart Institute (InCor), University of Sao Paulo Medical School, Sao Paulo, Brazil.
Description: Backcross marker-assisted method was used to fix the BN fragment onto SHR genome, once selection was done using markers, male and female were crossed to get homozygous animals
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,006,124 - 120,102,625RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0481,874,073 - 119,546,974RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04146,540,904 - 184,799,673RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4480,205,349 - 121,829,076RGD_MAPPER_PIPELINERGSC3.4

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
# Reference Title Reference Citation
1. Congenic strains provide evidence that four mapped loci in chromosomes 2, 4, and 16 influence hypertension in the SHR. Aneas I, etal., Physiol Genomics. 2009 Mar 3;37(1):52-7. Epub 2009 Jan 6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D4Rat33)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2481,006,124 - 81,006,281 (+)MAPPER
Rnor_6.0481,874,073 - 81,874,227NCBI
Rnor_5.04146,540,904 - 146,541,058UniSTS
RGSC_v3.4480,205,350 - 80,205,504UniSTS
RGSC_v3.4480,205,349 - 80,205,504RGD
RGSC_v3.1480,481,479 - 80,481,634RGD
Celera475,898,515 - 75,898,669UniSTS
RH 3.4 Map4512.42RGD
RH 3.4 Map4512.42UniSTS
RH 2.0 Map4546.7RGD
SHRSP x BN Map440.85RGD
FHH x ACI Map447.95RGD
Cytogenetic Map4q24UniSTS

Flank 2 / 1 (D4Rat54)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24120,102,454 - 120,102,625 (+)MAPPER
Rnor_6.04119,546,804 - 119,546,974NCBI
Rnor_5.04184,799,503 - 184,799,673UniSTS
RGSC_v3.44121,828,905 - 121,829,076RGD
RGSC_v3.44121,828,906 - 121,829,076UniSTS
RGSC_v3.14122,073,386 - 122,073,557RGD
Celera4109,069,673 - 109,069,839UniSTS
RH 3.4 Map4710.5RGD
RH 3.4 Map4710.5UniSTS
RH 2.0 Map4739.9RGD
SHRSP x BN Map456.08RGD
Cytogenetic Map4q34UniSTS
Strain QTL Data
Symbol Name Trait
Bp338 Blood pressure QTL 338 arterial blood pressure trait   (VT:2000000)    

Additional Information