Strain Report - Rat Genome Database

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Strain: SHR.BN-(D2Rat114-D2Rat123)/Jk

Symbol: SHR.BN-(D2Rat114-D2Rat123)/Jk
Strain: SHR.BN-(D2Rat114-D2Rat123)
Substrain: Jk
RGD ID: 2306892
Citation ID: RRID:RGD_2306892
Ontology ID: RS:0002154
Previously known as: SHR.BN2a; SHR.BN-(D2Rat114-D2Rat123)/Jk; SHR.BN-(D2Rat114-D2Rat123)/Jk
Type: congenic
Source: Heart Institute (InCor), University of Sao Paulo Medical School, Sao Paulo, Brazil. Genetica
Origin: Backcross marker-assisted method was used to fix the BN fragment onto SHR genome, once selection was done using markers, male and female were crossed to get homozygous animals
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22109,366,814 - 109,366,971RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0236,245,223 - 112,175,725RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0255,361,257 - 131,889,716RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4236,432,989 - 112,326,568RGD_MAPPER_PIPELINERGSC3.4

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
# Reference Title Reference Citation
1. Congenic strains provide evidence that four mapped loci in chromosomes 2, 4, and 16 influence hypertension in the SHR. Aneas I, etal., Physiol Genomics. 2009 Mar 3;37(1):52-7. Epub 2009 Jan 6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D2Rat114)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0236,245,223 - 36,245,442NCBI
Rnor_5.0255,361,257 - 55,361,476UniSTS
RGSC_v3.4236,433,087 - 36,433,332UniSTS
RGSC_v3.4236,432,989 - 36,433,341RGD
RGSC_v3.1236,353,456 - 36,353,701RGD
Celera232,635,324 - 32,635,569UniSTS
RH 3.4 Map2161.1RGD
RH 3.4 Map2161.1UniSTS
RH 2.0 Map245.8RGD
SHRSP x BN Map216.1298RGD
Cytogenetic Map2q16UniSTS

Flank 2 / 1 (D2Rat123)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22109,366,814 - 109,366,971 (+)MAPPER
Rnor_6.02112,175,569 - 112,175,725NCBI
Rnor_5.02131,889,560 - 131,889,716UniSTS
RGSC_v3.42112,326,411 - 112,326,568RGD
RGSC_v3.42112,326,412 - 112,326,568UniSTS
RGSC_v3.12112,271,374 - 112,271,530RGD
Celera2104,595,579 - 104,595,735UniSTS
RH 3.4 Map2725.9UniSTS
RH 3.4 Map2725.9RGD
RH 2.0 Map2533.9RGD
SHRSP x BN Map238.7498RGD
FHH x ACI Map250.0599RGD
Strain QTL Data
Symbol Name Trait
Bp336 Blood pressure QTL 336 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other this congenic is not salt sensitive 2306880