Strain Report - Rat Genome Database

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Strain: E3.DA-(D12Wox5-D12Rat26)/Rhd

Symbol: E3.DA-(D12Wox5-D12Rat26)/Rhd
Strain: E3.DA-(D12Wox5-D12Rat26)
Substrain: Rhd
RGD ID: 2306841
Citation ID: RRID:RGD_2306841
Ontology ID: RS:0001864
Previously known as: E3.DA-(D12Wox5-D12Rat26)/Rhd; E3.DA-Pia4; E3.DA-Pia4; E3.DA-(D12Wox5-D12Rat26)/Rhd
Type: congenic
Source: Section for Medical Inflammation Research, Lund University, Lund, Sweden.
Origin: This congenic strain was obtained by the conventional backcross breeding to the parental strain with positive selection of microsatellite markers
Inbred Generations: F5
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,635,523 - 22,692,658RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01215,714,609 - 25,711,626RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01217,721,341 - 27,718,984RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41223,845,554 - 23,845,733RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Detection of arthritis-susceptibility loci, including Ncf1, and variable effects of the major histocompatibility complex region depending on genetic background in rats. Rintisch C, etal., Arthritis Rheum. 2009 Feb;60(2):419-27.


Position Markers

Flank 1 / 1 (D12Wox5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21213,635,523 - 13,635,658 (+)MAPPER
Rnor_6.01215,714,609 - 15,714,743NCBI
Rnor_5.01217,721,341 - 17,721,475UniSTS
Celera1215,396,902 - 15,397,046UniSTS
RH 3.4 Map12175.8RGD
RH 3.4 Map12175.8UniSTS
RH 2.0 Map12146.0RGD
Cytogenetic Map12q11UniSTS

Flank 2 / 1 (D12Rat26)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21222,692,481 - 22,692,658 (+)MAPPER
Rnor_6.01225,711,448 - 25,711,626NCBI
Rnor_5.01227,718,806 - 27,718,984UniSTS
RGSC_v3.41223,845,555 - 23,845,733UniSTS
RGSC_v3.41223,845,554 - 23,845,733RGD
RGSC_v3.11223,708,770 - 23,708,949RGD
Celera1224,451,694 - 24,451,872UniSTS
SHRSP x BN Map1225.79UniSTS
SHRSP x BN Map1225.79RGD
FHH x ACI Map1211.22RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_drgs_chems Arthritis is induced by native type II collagen emulsified in Freund's incomplete adjuvant or pristane induced 2306838
strain_other Ncf1 allele has no effect on the susceptibility or severity of arthritis 2306838
strain_other Pia4 region is harbored in this strain 2306838