Strain Report - Rat Genome Database

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Strain: SS.SR-(D7Rat67-D7Mco7)/Jr

Symbol: SS.SR-(D7Rat67-D7Mco7)/Jr
Strain: SS.SR-(D7Rat67-D7Mco7)
Substrain: Jr
RGD ID: 2306815
Citation ID: RRID:RGD_2306815
Ontology ID: RS:0002210
Also Known As: S.R(11Bx4x2); SS.SR-(D7Rat67-D7Mco7)/Jr; SS.SR-(D7Rat67-D7Mco7)/Jr
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: Congenic substrain developed by crossing SS.SR-(D7Uia1-D7Mco7)/Jr to SS/Jr to produce F1 which were intercrossed and genotyped
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27105,699,315 - 105,699,492RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07115,041,287 - 115,041,463RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07114,961,803 - 116,100,169RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.47111,506,104 - 113,014,423RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Defining the blood pressure QTL on Chromosome 7 in Dahl rats by a 177-kb congenic segment containing Cyp11b1. Garrett MR and Rapp JP, Mamm Genome 2003 Apr;14(4):268-73.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Rat67)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27105,699,315 - 105,699,492 (+)MAPPER
Rnor_6.07115,041,287 - 115,041,463NCBI
Rnor_5.07114,961,803 - 114,961,979UniSTS
RGSC_v3.47111,506,104 - 111,506,281RGD
RGSC_v3.47111,506,105 - 111,506,281UniSTS
RGSC_v3.17111,540,335 - 111,540,511RGD
Celera7102,106,391 - 102,106,567UniSTS
RH 3.4 Map7758.9RGD
RH 3.4 Map7758.9UniSTS
RH 2.0 Map7594.3RGD
SHRSP x BN Map761.31RGD
Cytogenetic Map7q34UniSTS

Flank 2 / 1 (D7Mco7)
Rat AssemblyChrPosition (strand)Source
Rnor_5.07116,059,683 - 116,060,096NCBI
Rnor_5.07116,059,684 - 116,060,096NCBI
Rnor_5.07116,099,756 - 116,100,169NCBI
RGSC_v3.47112,979,257 - 112,979,667UniSTS
RGSC_v3.47112,979,256 - 112,979,667RGD
RGSC_v3.47113,014,011 - 113,014,423RGD
RGSC_v3.17113,048,241 - 113,048,653RGD
Cytogenetic Map7q34UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other lower end of this strain is defined by crossover which occurred between exon 2 and 7 of the Cyp11b1 gene 629613

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SS.SR-(D7Rat67-D7Mco7)/Jr    SS.SR-(D7Rat67-D7Mco7)/Jr    Name updated 68913 APPROVED
2013-08-28 SS.SR-(D7Rat67-D7Mco7)/Jr    SS.SR-(D7Rat67-D7Mco7)/Jr    Name updated 68913 APPROVED