Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: BN.LEC-(D4Rat128-D4Rat238)/Hkv

Symbol: BN.LEC-(D4Rat128-D4Rat238)/Hkv
Strain: BN.LEC-(D4Rat128-D4Rat238)
Substrain: Hkv
RGD ID: 2306105
Citation ID: RRID:RGD_2306105
Ontology ID: RS:0001801
Also Known As: BN.LEC-(D4Rat128-D4Rat238)/Hkv; B1; NBRP Rat No: 0533; BN.LEC-(D4Rat128-D4Rat238)/Hkv
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: Developed by the DEPOSITOR
Inbred Generations: F13
Last Known Status: Cryopreserved Sperm
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2479,986,873 - 139,725,596RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0480,666,353 - 138,891,201RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04145,335,315 - 203,361,566RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4479,189,959 - 142,160,377RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Genetic linkage analysis of X-ray hypersensitivity in the LEC mutant rat. Agui T, etal., Mamm Genome 2000 Oct;11(10):862-5.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat128)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2479,986,873 - 79,987,019 (+)MAPPER
Rnor_6.0480,666,353 - 80,666,496NCBI
Rnor_5.04145,335,315 - 145,335,458UniSTS
RGSC_v3.4479,189,959 - 79,190,364RGD
RGSC_v3.4479,190,218 - 79,190,361UniSTS
RGSC_v3.1479,466,089 - 79,466,494RGD
Celera474,893,212 - 74,893,355UniSTS
RH 3.4 Map4510.7UniSTS
RH 3.4 Map4510.7RGD
RH 2.0 Map4550.9RGD
SHRSP x BN Map437.38RGD
FHH x ACI Map447.99RGD

Flank 2 / 1 (D4Rat238)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24139,725,403 - 139,725,596 (+)MAPPER
Rnor_6.04138,891,009 - 138,891,201NCBI
Rnor_5.04203,361,390 - 203,361,566UniSTS
RGSC_v3.44142,160,182 - 142,160,377RGD
RGSC_v3.44142,160,183 - 142,160,377UniSTS
RGSC_v3.14142,405,023 - 142,405,218RGD
Celera4128,437,704 - 128,437,898UniSTS
SHRSP x BN Map463.48RGD
SHRSP x BN Map463.48UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Sib-mating. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-29 BN.LEC-(D4Rat128-D4Rat238)/Hkv    BN.LEC-(D4Rat128-D4Rat238)/Hkv    Name updated 68913 APPROVED
2012-05-29 BN.LEC-(D4Rat128-D4Rat238)/Hkv    BN.LEC-(D4Rat128-D4Rat238)/Hkv    Name updated 68913 APPROVED