Strain Report - Rat Genome Database

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Strain: ACI.BUF-(D7Wox16-D7Rat69)/Mna

Symbol: ACI.BUF-(D7Wox16-D7Rat69)/Mna
Strain: ACI.BUF-(D7Wox16-D7Rat69)
Substrain: Mna
RGD ID: 2306089
Citation ID: RRID:RGD_2306089
Ontology ID: RS:0001748
Also Known As: ACI.BUF-(D7Wox16-D7Rat69)/Mna; ACI/N-Tsr1/Tsr1; NBRP Rat No: 0505; ACI.BUF-(D7Wox16-D7Rat69)/Mna
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: The thymoma susceptible locus of rat-1, Tsr1 (on Chr.7) was transferred from BUF/Mna to ACI/NMs by repeated backcrossing.
Coat Color: Agouti
Inbred Generations: F8
Last Known Status: Cryopreserved Sperm
Research Usage Cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2760,460,452 - 60,460,686RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0767,801,457 - 67,801,690RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0767,991,394 - 116,151,991RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4764,611,964 - 113,044,228RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Establishment of thymoma-prone congenic rat strain, ACI.BUF/Mna-Tsr1/Tsr1. Matsuyama M, etal., J Cancer Res Clin Oncol. 2008 Jul;134(7):789-92. Epub 2008 Jan 22.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Wox16)
Rat AssemblyChrPosition (strand)Source
Rnor_5.07116,151,707 - 116,151,991NCBI
Rnor_5.07116,098,481 - 116,098,761NCBI
Rnor_5.07116,058,408 - 116,058,688NCBI
RGSC_v3.47113,012,736 - 113,013,015RGD
RGSC_v3.47113,043,945 - 113,044,228RGD
RGSC_v3.47112,977,966 - 112,978,266RGD
RGSC_v3.17113,012,196 - 113,012,496RGD
Celera7103,211,558 - 103,211,847UniSTS
Celera7103,180,377 - 103,180,655UniSTS
RH 3.4 Map7771.9RGD
RH 3.4 Map7771.9UniSTS
RH 2.0 Map7605.5RGD
Cytogenetic Map7q34UniSTS

Flank 2 / 1 (D7Rat69)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2760,460,452 - 60,460,686 (+)MAPPER
Rnor_6.0767,801,457 - 67,801,690NCBI
Rnor_5.0767,991,394 - 67,991,627UniSTS
RGSC_v3.4764,611,964 - 64,612,195RGD
RGSC_v3.4764,611,965 - 64,612,198UniSTS
RGSC_v3.1764,632,694 - 64,632,925RGD
Celera757,618,356 - 57,618,589UniSTS
SHRSP x BN Map736.68UniSTS
SHRSP x BN Map736.68RGD
FHH x ACI Map733.46RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other About 75% F1 rats which generated by crossing ACI.BUF-(D7Wox16-D7Rat69)/Mna rats with ACI/NMs rats develop tymoma at 2 years of age. 1302502
strain_reproduction Sib mating. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-29 ACI.BUF-(D7Wox16-D7Rat69)/Mna    ACI.BUF-(D7Wox16-D7Rat69)/Mna    Name updated 68913 APPROVED
2012-05-29 ACI.BUF-(D7Wox16-D7Rat69)/Mna    ACI.BUF-(D7Wox16-D7Rat69)/Mna    Name updated 68913 APPROVED