Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.SHR-(D9Wox16-D9Mco85)/Mco

Symbol: SS.SHR-(D9Wox16-D9Mco85)/Mco
Strain: SS.SHR-(D9Wox16-D9Mco85)
Substrain: Mco
RGD ID: 2303154
Citation ID: RRID:RGD_2303154
Ontology ID: RS:0002206
Also Known As: SS.SHR-(D9Wox16-D9Mco85)/Mco;S.SHR(9)x4A; SS.SHR-(D9Wox16-D9Mco85)/Mco
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio
Description: This is a congenic substrain developed by crossing SS.SHR-(D9Wox16-D9Rat64)/Mco to SS/Jr to get F2 which were again crossed with SS/Jr to duplicate the recombinant region
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2922,198,773 - 78,595,166RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0925,819,185 - 82,890,620RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0924,681,016 - 82,659,881RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4918,476,042 - 76,456,066RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Blood pressure and proteinuria effects of multiple quantitative trait loci on rat chromosome 9 that differentiate the spontaneously hypertensive rat from the Dahl salt-sensitive rat. Toland EJ, etal., J Hypertens. 2008 Nov;26(11):2134-41.


Position Markers

Flank 1 / 1 (D9Wox16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2922,198,773 - 22,198,945 (+)MAPPER
Rnor_6.0925,819,185 - 25,819,356NCBI
Rnor_5.0924,681,016 - 24,681,187UniSTS
RGSC_v3.4918,476,043 - 18,476,214UniSTS
RGSC_v3.4918,476,042 - 18,476,214RGD
RGSC_v3.1918,473,364 - 18,473,536RGD
Celera919,782,099 - 19,782,270UniSTS
RH 3.4 Map9191.5UniSTS
RH 3.4 Map9191.5RGD
RH 2.0 Map9163.2RGD
Cytogenetic Map9 RGD

Flank 2 / 1 (D9Mco85)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2978,594,966 - 78,595,166 (+)MAPPER
Rnor_6.0982,890,421 - 82,890,620NCBI
Rnor_5.0982,659,682 - 82,659,881UniSTS
RGSC_v3.4976,455,867 - 76,456,066UniSTS
Celera976,131,308 - 76,131,507UniSTS
Cytogenetic Map9 RGD
Strain QTL Data
Symbol Name Trait
Bp333 Blood pressure QTL 333 arterial blood pressure trait   (VT:2000000)    

Additional Information

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SS.SHR-(D9Wox16-D9Mco85)/Mco    SS.SHR-(D9Wox16-D9Mco85)/Mco    Name updated 68913 APPROVED
2013-08-28 SS.SHR-(D9Wox16-D9Mco85)/Mco    SS.SHR-(D9Wox16-D9Mco85)/Mco    Name updated 68913 APPROVED