Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: BN.GH-(D6Mit12-D6Rat15)/Mcwi

Symbol: BN.GH-(D6Mit12-D6Rat15)/Mcwi
Strain: BN.GH-(D6Mit12-D6Rat15)
Substrain: Mcwi
RGD ID: 2301938
Citation ID: RRID:RGD_2301938
Ontology ID: RS:0001667
Previously known as: BN.GH6;BN.GH-(D6Mit12-D6Rat15)/Mcwi; BN.GH-(D6Mit12-D6Rat15)/Mcwi
Type: congenic
Source: Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin
Origin: Male GH/Omr were intercrossed with female BN/Elh then F1 male offspring was backcrossed to female BN/Elh, marker-assisted selection strategy was used to select the males who were backcrossed to BN for 10 generations
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26100,873,387 - 100,873,560RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.06104,890,044 - 104,890,216RGD_MAPPER_PIPELINERnor6.0
Rnor_5.062,916,444 - 113,050,815RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.463,158,401 - 105,011,726RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Genetically Hypertensive Brown Norway congenic rat strains suggest intermediate traits underlying genetic hypertension. Bilusic M, etal., Croat Med J. 2008 Oct;49(5):586-99.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D6Mit12)
Rat AssemblyChrPosition (strand)Source
Rnor_5.062,916,444 - 2,916,542NCBI
RGSC_v3.463,158,401 - 3,158,498RGD
Celera614,434,730 - 14,434,828UniSTS
RH 3.4 Map666.8UniSTS
RH 3.4 Map666.8RGD
FHH x ACI Map61.69UniSTS
FHH x ACI Map61.69RGD
Cytogenetic Map6q11UniSTS

Flank 2 / 1 (D6Rat15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.26100,873,387 - 100,873,560 (+)MAPPER
Rnor_6.06104,890,044 - 104,890,216NCBI
Rnor_5.06113,050,643 - 113,050,815UniSTS
RGSC_v3.46105,011,554 - 105,011,726UniSTS
RGSC_v3.46105,011,553 - 105,011,726RGD
RGSC_v3.16105,015,010 - 105,015,182RGD
Celera698,726,271 - 98,726,443UniSTS
RH 3.4 Map6728.7RGD
RH 3.4 Map6728.7UniSTS
RH 2.0 Map6918.7RGD
SHRSP x BN Map658.9698RGD

Additional Information