Strain Report - Rat Genome Database

Name: SHRSP.WKY-( D2Rat132-D2Rat53 )/Gcrc
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SHRSP.WKY-(D2Rat132-D2Rat53)/Gcrc

Symbol:

SHRSP.WKY-(D2Rat132-D2Rat53)/Gcrc

Strain:

SHRSP.WKY-(D2Rat132-D2Rat53)

Substrain:

Gcrc

RGD ID:

2301369

Citation ID:

RRID:RGD_2301369

Ontology ID:

RS:0001651

Also Known As:

SP.WKYGla2i;SHRSP.WKY-(D2Rat132-D2Rat53)/Gcrc; N3265; MDC-03-36; SHRSP.WKY-(D2Rat132-D2Rat53)/Gcrc

Type:

congenic

Available Source:

Not Available

Origination:

University of Glasgow, Western Infirmary, Glasgow, UK

Description:

Congenic substrain generated by crossing SHRSP.WKY-(D2Rat13-D2Rat157)/Gcrc males with SHRSP/Gcrc females then intercrossed to fix the small congenic fragment

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	188,657,176 - 196,146,841	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	2	203,613,889 - 211,301,253	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	2	223,058,573 - 230,770,799	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	2	196,277,776 - 204,077,687	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

hypertension (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	The genetics of cardiovascular disease.	Delles C, etal., Trends Endocrinol Metab. 2008 Sep 24.
2.	Candidate Genes That Determine Response to Salt in the Stroke-Prone Spontaneously Hypertensive Rat. Congenic Analysis.	Graham D, etal., Hypertension. 2007 Oct 15;.
3.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
4.	SNP and haplotype mapping for genetic analysis in the rat.	Saar K, etal., Nat Genet. 2008 May;40(5):560-6.

Region

Position Markers

Flank 1 / 1 (D2Rat132)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	188,657,176 - 188,657,378 (+)	MAPPER
Rnor_6.0	2	203,613,889 - 203,614,090	NCBI
Rnor_5.0	2	223,058,573 - 223,058,774	UniSTS
RGSC_v3.4	2	196,277,777 - 196,277,978	UniSTS
RGSC_v3.4	2	196,277,776 - 196,277,978	RGD
RGSC_v3.1	2	196,240,531 - 196,240,732	RGD
Celera	2	181,095,834 - 181,096,035	UniSTS
RH 3.4 Map	2	1293.4	RGD
RH 3.4 Map	2	1293.4	UniSTS
RH 2.0 Map	2	968.9	RGD
SHRSP x BN Map	2	72.7698	RGD

Flank 2 / 1 (D2Rat53)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	196,146,703 - 196,146,841 (+)	MAPPER
Rnor_6.0	2	211,301,116 - 211,301,253	NCBI
Rnor_5.0	2	230,770,662 - 230,770,799	UniSTS
RGSC_v3.4	2	204,077,549 - 204,077,687	RGD
RGSC_v3.4	2	204,077,550 - 204,077,687	UniSTS
RGSC_v3.1	2	204,040,304 - 204,040,441	RGD
Celera	2	188,792,528 - 188,792,665	UniSTS
RH 3.4 Map	2	1395.3	UniSTS
RH 3.4 Map	2	1395.3	RGD
SHRSP x BN Map	2	75.1598	UniSTS
SHRSP x BN Map	2	75.1598	RGD
Cytogenetic Map	2	q34	UniSTS

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHRSP.WKY-(D2Rat132-D2Rat53)/Gcrc

Mammalian Phenotype