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Strain Registration

Strain: SS.LEW-(D18Rat30-D18Chm29)/Ayd

Symbol: SS.LEW-(D18Rat30-D18Chm29)/Ayd
Strain: SS.LEW-(D18Rat30-D18Chm29)
Substrain: Ayd
RGD ID: 2301249
Citation ID: RRID:RGD_2301249
Ontology ID: RS:0001646
Previously known as: C18S.L9;SS.LEW-(D18Rat30-D18Chm29)/Ayd; DSS-LEW-(D18Rat30-C18Chm29)/Lt; SS.LEW-(D18Rat30-D18Chm29)/Ayd
Type: congenic
Source: Research Centre-CHUM, Montreal, Quebec, Canada
Origin: A segment of chromosome 3 was transferred from LEW/Clrc into the SS/Jr background. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,584,537 - 11,796,356RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0185,825,946 - 15,691,464RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0185,795,276 - 15,461,904RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4185,682,011 - 12,249,935RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D18Rat30-D18Chm29)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
aorta mass  EXP 1599557 RGD 
heart left ventricle mass  EXP 1599557 RGD 
heart mass  EXP 1599557 RGD 
heart right ventricle mass  EXP 1599557 RGD 
kidney mass  EXP 1599557 RGD 

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D18Rat30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,584,537 - 5,584,636 (+)MAPPER
Rnor_6.0185,825,946 - 5,826,044NCBI
Rnor_5.0185,795,276 - 5,795,374UniSTS
RGSC_v3.4185,682,011 - 5,682,109UniSTS
Celera185,617,562 - 5,617,660UniSTS
RH 2.0 Map18824.1RGD
SHRSP x BN Map182.52RGD

Flank 2 / 1 (D18Chm29)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21811,796,116 - 11,796,356 (-)MAPPER
Rnor_6.01815,691,225 - 15,691,464NCBI
Rnor_5.01815,461,665 - 15,461,904UniSTS
RGSC_v3.41812,249,696 - 12,249,935UniSTS
Celera1811,811,666 - 11,811,905UniSTS
Cytogenetic Map18 RGD
Strain QTL Data
Symbol Name Trait
Am21 Aortic mass QTL 21 aorta mass   (VT:0002845)    
Cm131 Cardiac mass QTL 131 heart left ventricle mass   (VT:0007031)    
Cm132 Cardiac mass QTL 132 heart right ventricle mass   (VT:0007033)    
Cm70 Cardiac mass QTL 70 heart mass   (VT:0007028)    
Kidm59 Kidney mass QTL 59 kidney mass   (VT:0002707)    

Additional Information