Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.LEW-(D3Got33-D3Chm68)/Ayd

Symbol: SS.LEW-(D3Got33-D3Chm68)/Ayd
Strain: SS.LEW-(D3Got33-D3Chm68)
Substrain: Ayd
RGD ID: 2301248
Citation ID: RRID:RGD_2301248
Ontology ID: RS:0001645
Previously known as: C3S.L6;SS.LEW-(D3Got33-D3Chm68)/Ayd; DSS.LEW-(D3Got33-D3Chm68)/Lt; SS.LEW-(D3Got33-D3Chm68)/Ayd
Type: congenic
Source: Research Centre-CHUM, Montreal, Quebec, Canada
Origin: A sub congenic strain derived from the progenitor strain SS.LEW-(D3Rat52-D3Rat17)/Ayd
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2347,769,862 - 62,962,984RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0349,115,270 - 64,892,832RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0355,769,295 - 71,451,283RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4345,100,293 - 60,708,929RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D3Got33-D3Chm68)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
aorta mass  EXP 1599557 RGD 
body mass  EXP 1599557 RGD 
heart left ventricle mass  EXP 1599557 RGD 
heart mass  EXP 1599557 RGD 
heart right ventricle mass  EXP 1599557 RGD 
kidney mass  EXP 1599557 RGD 

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Got33)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2347,769,862 - 47,770,067 (+)MAPPER
Rnor_6.0349,115,270 - 49,115,474NCBI
Rnor_5.0355,769,295 - 55,769,499UniSTS
RGSC_v3.4345,100,293 - 45,100,498RGD
RGSC_v3.4345,100,294 - 45,100,498UniSTS
RGSC_v3.1344,996,666 - 44,996,870RGD
Celera347,403,621 - 47,403,821UniSTS
RH 3.4 Map3603.83UniSTS
RH 3.4 Map3603.83RGD
RH 2.0 Map3380.1RGD
Cytogenetic Map3q21UniSTS

Flank 2 / 1 (D3Chm68)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2362,962,920 - 62,962,984 (+)MAPPER
mRatBN7.2362,962,885 - 62,962,920 (+)MAPPER
Rnor_6.0364,892,119 - 64,892,832NCBI
Rnor_6.0364,892,119 - 64,892,368NCBI
Rnor_5.0371,450,570 - 71,451,283UniSTS
Rnor_5.0371,450,570 - 71,450,819UniSTS
RGSC_v3.4360,708,679 - 60,708,929RGD
RGSC_v3.4360,708,680 - 60,708,929UniSTS
Celera362,434,321 - 62,434,571UniSTS
Strain QTL Data
Symbol Name Trait
Am6 Aortic mass QTL 6 aorta mass   (VT:0002845)    
Bw177 Body weight QTL 177 body mass   (VT:0001259)    
Cm68 Cardiac mass QTL 68 heart mass   (VT:0007028)    
Cm94 Cardiac mass QTL 94 heart left ventricle mass   (VT:0007031)    
Cm95 Cardiac mass QTL 95 heart right ventricle mass   (VT:0007033)    
Kidm57 Kidney mass QTL 57 kidney mass   (VT:0002707)    

Additional Information