Strain Report - Rat Genome Database

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Strain: SS.LEW-(D16Got3-D16Rat112)/Ayd

Symbol: SS.LEW-(D16Got3-D16Rat112)/Ayd
Strain: SS.LEW-(D16Got3-D16Rat112)
Substrain: Ayd
RGD ID: 2301247
Citation ID: RRID:RGD_2301247
Ontology ID: RS:0001644
Also Known As: C16S.L5;SS.LEW-(D16Got3-D16Rat112)/Ayd; DSS.LEW-(D16Got3-D16Rat112)/Lt; SS.LEW-(D16Got3-D16Rat112)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: A sub congenic strain derived from the progenitor strain SS.LEW-(D16Mit2-D16Chm23)/Ayd
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.216110,590 - 3,447,332RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.016778,415 - 4,203,372RGD_MAPPER_PIPELINERnor6.0
Rnor_5.016773,329 - 4,149,422RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41664,718 - 3,531,727RGD_MAPPER_PIPELINERGSC3.4

Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D16Got3-D16Rat112)/AydRatSS.LEW-(D16Got3-D16Rat112)/Ayd  IEA 7241799 RGD 


References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D16Got3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2163,447,063 - 3,447,332 (+)MAPPER
Rnor_6.0164,203,104 - 4,203,372NCBI
Rnor_5.0164,149,154 - 4,149,422UniSTS
RGSC_v3.4163,531,458 - 3,531,727RGD
RGSC_v3.4163,531,459 - 3,531,727UniSTS
RGSC_v3.1163,531,457 - 3,531,725RGD
Celera163,394,651 - 3,394,919UniSTS
RH 3.4 Map1613.6UniSTS
RH 3.4 Map1613.6RGD
RH 2.0 Map160.0RGD
Cytogenetic Map16p16UniSTS

Flank 2 / 1 (D16Rat112)
Rat AssemblyChrPosition (strand)Source
mRatBN7.216110,590 - 110,831 (+)MAPPER
Rnor_6.016778,415 - 778,655NCBI
Rnor_5.016773,329 - 773,569UniSTS
RGSC_v3.41664,718 - 64,959RGD
RGSC_v3.41664,719 - 64,959UniSTS
RGSC_v3.11664,718 - 64,959RGD
Celera1697,314 - 97,554UniSTS
FHH x ACI Map160.0UniSTS
FHH x ACI Map160.0RGD
Strain QTL Data
Symbol Name Trait
Am16 Aortic mass QTL 16 aorta mass   (VT:0002845)    
Bp321 Blood pressure QTL 321 arterial blood pressure trait   (VT:2000000)    
Bw186 Body weight QTL 186 body mass   (VT:0001259)    
Cm115 Cardiac mass QTL 115 heart mass   (VT:0007028)    
Cm116 Cardiac mass QTL 116 heart left ventricle mass   (VT:0007031)    
Cm117 Cardiac mass QTL 117 heart right ventricle mass   (VT:0007033)    
Kidm69 Kidney mass QTL 69 kidney mass   (VT:0002707)    

Additional Information