Strain Report - Rat Genome Database

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Strain: SS.LEW-(D3Rat61-D3Wox1)/Ayd

Symbol: SS.LEW-(D3Rat61-D3Wox1)/Ayd
Strain: SS.LEW-(D3Rat61-D3Wox1)
Substrain: Ayd
RGD ID: 2301246
Citation ID: RRID:RGD_2301246
Ontology ID: RS:0001643
Previously known as: SS.LEW-(D3Rat17-D3Mco80)/Ayd; SS.LEW-(D3Rat17-D3Mco80)/Ayd; C3S.L7;SS.LEW-(D3Rat61-D3Wox1)/Ayd; DSS.LEW-(D3Rat61-D3Wox1)/Lt; SS.LEW-(D3Rat61-D3Wox1)/Ayd
Type: congenic
Source: Research Centre-CHUM, Montreal, Quebec, Canada
Origin: A segment of chromosome 3 was transferred from LEW/Crlc into the SS/Jr background. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,925,360 - 166,177,555RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03153,381,237 - 174,632,112RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03158,115,782 - 182,470,017RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.43147,852,788 - 168,149,595RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D3Rat61)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23145,925,360 - 145,925,493 (+)MAPPER
mRatBN7.23145,925,360 - 145,925,493 (-)MAPPER
Rnor_6.03153,650,444 - 153,650,576NCBI
Rnor_6.03153,381,237 - 153,381,369NCBI
Rnor_5.03158,115,782 - 158,115,914UniSTS
Rnor_5.03158,338,509 - 158,338,641UniSTS
RGSC_v3.43147,852,788 - 147,852,921RGD
RGSC_v3.43147,852,789 - 147,852,921UniSTS
RGSC_v3.13147,758,698 - 147,758,830RGD
Celera3144,631,052 - 144,631,184UniSTS
RH 3.4 Map31342.7RGD
RH 3.4 Map31342.7UniSTS
RH 2.0 Map3902.5RGD
FHH x ACI Map386.9299RGD

Flank 2 / 1 (D3Wox1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23166,177,348 - 166,177,555 (+)MAPPER
Rnor_6.03174,631,906 - 174,632,112NCBI
Rnor_5.03182,469,811 - 182,470,017UniSTS
RGSC_v3.43168,149,388 - 168,149,595RGD
RGSC_v3.43168,149,389 - 168,149,595UniSTS
RGSC_v3.13168,055,425 - 168,055,631RGD
Celera3166,390,198 - 166,390,404UniSTS
RH 3.4 Map31512.7UniSTS
RH 3.4 Map31512.7RGD
RH 2.0 Map31024.5RGD
Cytogenetic Map3 RGD
Strain QTL Data
Symbol Name Trait
Am7 Aortic mass QTL 7 aorta mass   (VT:0002845)    
Bp320 Blood pressure QTL 320 arterial blood pressure trait   (VT:2000000)    
Bw182 Body weight QTL 182 body mass   (VT:0001259)    
Cm96 Cardiac mass QTL 96 heart mass   (VT:0007028)    
Cm97 Cardiac mass QTL 97 heart left ventricle mass   (VT:0007031)    
Cm98 Cardiac mass QTL 98 heart right ventricle mass   (VT:0007033)    
Kidm64 Kidney mass QTL 64 kidney mass   (VT:0002707)    

Additional Information