Strain Report - Rat Genome Database

Name: LEW.WKY-( D16Rat88-D16Rat40 )/Tja
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: LEW.WKY-(D16Rat88-D16Rat40)/Tja

Symbol:

LEW.WKY-(D16Rat88-D16Rat40)/Tja

Strain:

LEW.WKY-(D16Rat88-D16Rat40)

Substrain:

Tja

RGD ID:

2293354

Citation ID:

RRID:RRRC_00708

Ontology ID:

RS:0001361

Previously known as:

LEW.WKY-(D16Rat88-D16Rat40);LEW.WCrgn2; LEW.WKY-(D16Rat88-D16Rat40)/Tja

Type:

congenic

Source:

Imperial College, London, UK. Rat Resource and Research Center

Origin:

segment of interest of chr 16 from WKY/NCrl was introgressed into LEW/SsNHsd

Last Known Status:

Cryopreserved Embryo; Cryopreserved Sperm (as of 2017-01-26)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	832,236 - 56,733,837	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	16	1,550,187 - 60,316,851	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	16	1,534,408 - 59,992,088	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	16	819,225 - 60,432,230	RGD_MAPPER_PIPELINE	RGSC3.4

Congenic Strains

LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased urine protein level (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Jund is a determinant of macrophage activation and is associated with glomerulonephritis susceptibility.	Behmoaras J, etal., Nat Genet. 2008 May;40(5):553-9.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D16Rat88)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	832,236 - 832,380 (+)	MAPPER
Rnor_6.0	16	1,550,187 - 1,550,330	NCBI
Rnor_5.0	16	1,534,408 - 1,534,551	UniSTS
RGSC_v3.4	16	819,226 - 819,369	UniSTS
RGSC_v3.4	16	819,225 - 819,369	RGD
RGSC_v3.1	16	819,226 - 819,369	RGD
Celera	16	812,123 - 812,266	UniSTS
RH 3.4 Map	18	655.3	RGD
RH 3.4 Map	18	655.3	UniSTS
RH 2.0 Map	18	257.7	RGD
SHRSP x BN Map	16	1.1999	RGD

Flank 2 / 1 (D16Rat40)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	56,733,634 - 56,733,837 (+)	MAPPER
Rnor_6.0	16	60,316,649 - 60,316,851	NCBI
Rnor_5.0	16	59,991,886 - 59,992,088	UniSTS
RGSC_v3.4	16	60,432,027 - 60,432,230	RGD
RGSC_v3.4	16	60,432,028 - 60,432,230	UniSTS
RGSC_v3.1	16	60,432,103 - 60,432,305	RGD
Celera	16	54,783,810 - 54,784,012	UniSTS
RH 3.4 Map	16	557.1	RGD
RH 3.4 Map	16	557.1	UniSTS
RH 2.0 Map	16	642.8	RGD
SHRSP x BN Map	16	22.66	RGD
Cytogenetic Map	16	q12.2	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2013-02-12	LEW.WKY-(D16Rat88-D16Rat40)/Tja	LEW.WKY-(D16Rat88-D16Rat40)	Symbol updated	68687	APPROVED
2013-02-12	LEW.WKY-(D16Rat88-D16Rat40)/Tja	LEW.WKY-(D16Rat88-D16Rat40)	Name updated	68913	APPROVED
2013-02-12	LEW.WKY-(D16Rat88-D16Rat40)/Tja	LEW.WKY-(D16Rat88-D16Rat40)	Symbol updated	68687	APPROVED
2013-02-12	LEW.WKY-(D16Rat88-D16Rat40)/Tja	LEW.WKY-(D16Rat88-D16Rat40)	Name updated	68913	APPROVED

External Database Links

Database	Acc Id	Source(s)
RRRC	RRRC:00708	RGD

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.WKY-(D16Rat88-D16Rat40)/Tja

Mammalian Phenotype