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Strain Registration

Strain: SS.BN-(D13Hmgc64-RN34_13048990782)/Mcwi

Symbol: SS.BN-(D13Hmgc64-RN34_13048990782)/Mcwi
Strain: SS.BN-(D13Hmgc64-RN34_13048990782)
Substrain: Mcwi
RGD ID: 2293145
Citation ID: RRID:RGD_2293145
Ontology ID: RS:0001486
Alleles: Ren
Also Known As: SS.BN-(D13Rat123-D13Rat101)/Mcwi|\SS.BN-(D13rat123-D13Rat101)/Mcwi;line D; congenic line 9; congenic strain 9; SS.BN-(D13Rat88-D13Rat91)/Mcwi;SS.BN-(D13Rat88-D13Rat91)/Mcwi; SS.BN-(D13Hmgc64-RN34_13048990782)/Mcwi; SS.BN-(D13Rat123-D13Rat101)/Mcwi; SS.BN-(D13Hmgc41-D13Rat101)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-Chr 13BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21343,763,752 - 43,763,948RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.21347,841,075 - 47,841,255RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01349,102,205 - 49,102,400RGD_MAPPER_PIPELINERnor6.0
Rnor_6.01353,264,698 - 53,264,877RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01358,314,588 - 58,314,767RGD_MAPPER_PIPELINERnor5.0
Rnor_5.01354,170,894 - 54,171,089RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41349,428,397 - 49,428,577RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41348,990,782 - 48,990,782RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41345,215,472 - 45,215,667RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique. Adamovic T, et al., Genes Chromosomes Cancer. 2010 Nov;49(11):1035-45.
2. Congenic strains reveal the effect of the renin gene on skeletal muscle angiogenesis induced by electrical stimulation. de Resende MM, etal., Physiol Genomics. 2008 Jan 15;.
3. Congenic mapping and sequence analysis of the Renin locus. Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4.
4. Female-specific hypertension loci on rat chromosome 13. Hoffman MJ, etal., Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.
5. Multiple Blood Pressure loci on rat Chromosome 13 attenuate the development of hypertension in the Dahl S Hypertensive rat. Moreno C, etal., Physiol Genomics. 2007 Jun 12;.
6. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Hmgc64)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21343,763,752 - 43,763,948 (+)MAPPER
Rnor_6.01349,102,205 - 49,102,400NCBI
Rnor_5.01354,170,894 - 54,171,089UniSTS
RGSC_v3.41345,215,472 - 45,215,667UniSTS
Celera1344,098,614 - 44,098,806UniSTS
Cytogenetic Map13q13UniSTS

Flank 2 / 1 -new marker (RN34_13048990782)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41348,990,782 - 48,990,782RGD

Flank 2 / 1 -old marker (D13Rat101)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21347,841,075 - 47,841,255 (+)MAPPER
Rnor_6.01353,264,698 - 53,264,877NCBI
Rnor_5.01358,314,588 - 58,314,767UniSTS
RGSC_v3.41349,428,397 - 49,428,577RGD
RGSC_v3.41349,428,398 - 49,428,577UniSTS
RGSC_v3.11349,442,478 - 49,442,657RGD
Celera1348,152,996 - 48,153,175UniSTS
RH 3.4 Map13148.8UniSTS
RH 3.4 Map13148.8RGD
FHH x ACI Map1319.33UniSTS
FHH x ACI Map1319.33RGD
Strain QTL Data
Symbol Name Trait
Bp328 Blood pressure QTL 328 arterial blood pressure trait   (VT:2000000)    
Mcs27 Mammary carcinoma susceptibility QTL 27 mammary gland integrity trait   (VT:0010552)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-06 SS.BN-(D13Hmgc64-RN34_13048990782)/Mcwi    SS.BN-(D13Rat123-D13Rat101)/Mcwi    Symbol updated 68687 APPROVED
2017-04-06 SS.BN-(D13Hmgc64-RN34_13048990782)/Mcwi    SS.BN-(D13Rat123-D13Rat101)/Mcwi    Symbol updated 68687 APPROVED