Strain Report - Rat Genome Database

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Strain: SS.BN-(D13Rat91-D13Rat179)/Mcwi

Symbol: SS.BN-(D13Rat91-D13Rat179)/Mcwi
Strain: SS.BN-(D13Rat91-D13Rat179)
Substrain: Mcwi
RGD ID: 2293144
RRID: RGD_2293144
Ontology ID: RS:0001490
Also known as: SS.BN-(D13Rat91-D13Rat179)/Mcwi;SS.BN-(D13rat91-D13Rat179)/Mcwi;line B; congenic line 13; congenic strain 13; SS.BN-(D13Rat123-D13Rat150)/Mcwi; SS.BN-(D13Rat123-D13Rat150)/Mcwi; SS.BN-(D13Rat91-D13Rat179)/Mcwi
Type: congenic
Source: Medical College of Wisconsin, Milwaukee, Wisconsin
Origin: SS/JrHsdMcwi were crossed with SS-13BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,417,753 - 58,498,119RGD_MAPPER_PIPELINE
Rnor_6.01350,799,478 - 63,611,529RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,853,015 - 68,592,209RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,911,975 - 60,669,696RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
1. de Resende MM, etal., Physiol Genomics. 2008 Jan 15;.
2. Moreno C, etal., Physiol Genomics. 2007 Jun 12;.
3. RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D13Rat91)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,417,753 - 45,417,941 (+)MAPPER
Rnor_6.01350,799,478 - 50,799,665NCBI
Rnor_5.01355,853,015 - 55,853,202UniSTS
RGSC_v3.41346,911,975 - 46,912,163RGD
RGSC_v3.41346,911,976 - 46,912,163UniSTS
RGSC_v3.11346,926,019 - 46,926,206RGD
Celera1345,746,900 - 45,747,075UniSTS
RH 3.4 Map13172.5UniSTS
RH 3.4 Map13172.5RGD
RH 2.0 Map13381.9RGD
SHRSP x BN Map1314.7498RGD
FHH x ACI Map1317.13RGD

Flank 2 / 1 (D13Rat179)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21358,497,872 - 58,498,119 (+)MAPPER
Rnor_6.01363,611,283 - 63,611,529NCBI
Rnor_5.01368,591,963 - 68,592,209UniSTS
RGSC_v3.41360,669,451 - 60,669,696RGD
RGSC_v3.41360,669,450 - 60,669,696UniSTS
RGSC_v3.11360,683,531 - 60,683,776RGD
Celera1358,541,101 - 58,541,347UniSTS
SHRSP x BN Map1322.7299RGD
SHRSP x BN Map1322.7299UniSTS
Cytogenetic Map13q21UniSTS

Additional Information