Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SS.BN-(D13Rat91-D13Rat179)/Mcwi

Symbol: SS.BN-(D13Rat91-D13Rat179)/Mcwi
Strain: SS.BN-(D13Rat91-D13Rat179)
Substrain: Mcwi
RGD ID: 2293144
Citation ID: RRID:RGD_2293144
Ontology ID: RS:0001490
Also Known As: SS.BN-(D13Rat91-D13Rat179)/Mcwi;SS.BN-(D13rat91-D13Rat179)/Mcwi;line B; congenic line 13; congenic strain 13; SS.BN-(D13Rat123-D13Rat150)/Mcwi; SS.BN-(D13Rat123-D13Rat150)/Mcwi; SS.BN-(D13Rat91-D13Rat179)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-13BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,417,753 - 58,498,119RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01350,799,478 - 63,611,529RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,853,015 - 68,592,209RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,911,975 - 60,669,696RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Congenic strains reveal the effect of the renin gene on skeletal muscle angiogenesis induced by electrical stimulation. de Resende MM, etal., Physiol Genomics. 2008 Jan 15;.
2. Multiple Blood Pressure loci on rat Chromosome 13 attenuate the development of hypertension in the Dahl S Hypertensive rat. Moreno C, etal., Physiol Genomics. 2007 Jun 12;.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Rat91)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,417,753 - 45,417,941 (+)MAPPER
Rnor_6.01350,799,478 - 50,799,665NCBI
Rnor_5.01355,853,015 - 55,853,202UniSTS
RGSC_v3.41346,911,975 - 46,912,163RGD
RGSC_v3.41346,911,976 - 46,912,163UniSTS
RGSC_v3.11346,926,019 - 46,926,206RGD
Celera1345,746,900 - 45,747,075UniSTS
RH 3.4 Map13172.5UniSTS
RH 3.4 Map13172.5RGD
RH 2.0 Map13381.9RGD
SHRSP x BN Map1314.7498RGD
FHH x ACI Map1317.13RGD

Flank 2 / 1 (D13Rat179)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21358,497,872 - 58,498,119 (+)MAPPER
Rnor_6.01363,611,283 - 63,611,529NCBI
Rnor_5.01368,591,963 - 68,592,209UniSTS
RGSC_v3.41360,669,451 - 60,669,696RGD
RGSC_v3.41360,669,450 - 60,669,696UniSTS
RGSC_v3.11360,683,531 - 60,683,776RGD
Celera1358,541,101 - 58,541,347UniSTS
SHRSP x BN Map1322.7299RGD
SHRSP x BN Map1322.7299UniSTS
Cytogenetic Map13q21UniSTS

Additional Information