Strain Report - Rat Genome Database

Name: SS.LEW-( D10Chm10-D10Chm14 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Chm10-D10Chm14)/Ayd

Symbol:

SS.LEW-(D10Chm10-D10Chm14)/Ayd

Strain:

SS.LEW-(D10Chm10-D10Chm14)

Substrain:

Ayd

RGD ID:

2292389

Citation ID:

RRID:RGD_2292389

Ontology ID:

RS:0001508

Previously known as:

C10S.L26; SS.LEW-(D10Chm10-D10Chm14)/Ayd; c10sl26; SS.LEW-(D10Chm10-D10Chm14)/Ayd

Type:

congenic

Source:

Research Centre, Centre Hospitalier de l'Universite de Montreal (CHUM), Montreal, Quebec, Canada

Origin:

A sub congenic strain derived from the progenitor strain SS.LEW-(D10Rat13-D10Rat11)/Ayd.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	92,348,201 - 94,759,977	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	95,617,075 - 98,079,438	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	95,351,725 - 97,793,613	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	96,778,676 - 99,233,951	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

salt-sensitive hypertension (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Submegabase resolution of epistatically interacting quantitative trait loci for blood pressure applicable for essential hypertension.	Chauvet C, etal., J Hypertens. 2008 May;26(5):893-901.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Chm10)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	92,348,201 - 92,348,404 (+)	MAPPER
Rnor_6.0	10	95,617,075 - 95,617,275	NCBI
Rnor_5.0	10	95,351,725 - 95,351,925	UniSTS
RGSC_v3.4	10	96,778,676 - 96,778,876	UniSTS
Celera	10	91,012,987 - 91,013,187	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Flank 2 / 1 (D10Chm14)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	94,759,759 - 94,759,977 (+)	MAPPER
Rnor_6.0	10	98,079,221 - 98,079,438	NCBI
Rnor_5.0	10	97,793,396 - 97,793,613	UniSTS
RGSC_v3.4	10	99,233,734 - 99,233,951	UniSTS
Celera	10	93,417,728 - 93,417,943	UniSTS
Cytogenetic Map	10		RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Chm10-D10Chm14)/Ayd

Mammalian Phenotype

Related Phenotype Data for Term "SS.LEW-(D10Chm10-D10Chm14)/Ayd" (RS:0001508)