Strain Report - Rat Genome Database

Name: SS.LEW-( D10Mco30-D10Got107 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Mco30-D10Got107)/Ayd

Symbol:

SS.LEW-(D10Mco30-D10Got107)/Ayd

Strain:

SS.LEW-(D10Mco30-D10Got107)

Substrain:

Ayd

RGD ID:

2292385

Citation ID:

RRID:RGD_2292385

Ontology ID:

RS:0001521

Previously known as:

C10S.L32; SS.LEW-(D10Mco30-D10Got107)/Ayd; c10sl32; SS.LEW-(D10Mco30-D10Got107)/Ayd

Type:

congenic

Source:

Research Centre, Centre Hospitalier de l'Universite de Montreal (CHUM), Montreal, Quebec, Canada

Origin:

A sub congenic strain derived from the progenitor strain SS.LEW-(D10Rat27-Igfbp4)/Ayd.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,887,148 - 75,121,215	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	76,420,583 - 77,803,328	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	73,693,979 - 77,664,589	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	77,547,289 - 78,712,717	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypertension (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

salt-sensitive hypertension (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci.	Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2.	Submegabase resolution of epistatically interacting quantitative trait loci for blood pressure applicable for essential hypertension.	Chauvet C, etal., J Hypertens. 2008 May;26(5):893-901.
3.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mco30)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	73,887,148 - 73,887,455 (+)	MAPPER
Rnor_6.0	10	76,420,583 - 76,420,889	NCBI
Rnor_5.0	10	73,693,979 - 73,694,285	UniSTS
RGSC_v3.4	10	77,547,353 - 77,547,622	RGD
RGSC_v3.4	10	77,547,289 - 77,547,595	UniSTS
RGSC_v3.1	10	77,561,658 - 77,561,965	RGD
Celera	10	72,791,736 - 72,792,042	UniSTS
Cytogenetic Map	10		RGD

Flank 2 / 1 (D10Got107)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	75,121,117 - 75,121,215 (+)	MAPPER
Rnor_6.0	10	77,803,231 - 77,803,328	NCBI
Rnor_5.0	10	77,664,492 - 77,664,589	UniSTS
RGSC_v3.4	10	78,712,620 - 78,712,717	RGD
RGSC_v3.4	10	78,712,620 - 78,712,717	UniSTS
RGSC_v3.1	10	78,726,990 - 78,727,087	RGD
RH 3.4 Map	10	673.5	RGD
RH 3.4 Map	10	673.5	UniSTS
RH 2.0 Map	10	798.8	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Mco30-D10Got107)/Ayd

Mammalian Phenotype

Related Phenotype Data for Term "SS.LEW-(D10Mco30-D10Got107)/Ayd" (RS:0001521)