Strain Report - Rat Genome Database

Name: F344- Glis1 Tn(sb-T2/Bart3)2.149Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}

Symbol:

F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}

Strain:

F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}

RGD ID:

2290138

Citation ID:

RRID:RRRC_00332

Ontology ID:

RS:0001257

Alleles:

Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}

Previously known as:

F344-Glis1_predictedTn(sb-T2/Bart3)2.149Mcwi; F344-Glis1_predicted^{Tn(sb-T2/Bart3)2.149Mcwi}; F344-Glis1Tn(sb-T2/Bart3)2.149Mcwi

Type:

mutant

Source:

PGA

Origin:

These Sleeping Beauty mutants were derived by crossing F344-TgTn(T2/Bart3)2Ceb (RGD:2290163) and F344-Tg(PGK2-sb11)Ceb (RGD:2290169).This mutation consists of an insertion of a Sleeping Beauty transposable element gene trap construct into the Glis1 gene.

Last Known Status:

Extinct (as of 2016-12-12)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	122,222,155 - 122,412,141	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	5	127,043,344 - 127,233,395	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	5	130,891,667 - 131,081,696	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	5	128,736,183 - 128,739,369	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Generation of rat mutants using a coat color-tagged Sleeping Beauty transposon system.	Lu B, etal., Mamm Genome. 2007 May;18(5):338-46. Epub 2007 Jun 8.
2.	Data registered by the Rat Resource & Research Center	Personal Communication with Rat Resource & Research Center
3.	PhysGen Strains	PhysGen strains
4.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2015-04-07	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2015-04-07	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2014-03-24	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Symbol updated	68687	APPROVED
2014-03-24	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2014-03-24	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Symbol updated	68687	APPROVED
2014-03-24	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2013-04-16	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2013-04-16	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2012-04-06	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2012-04-06	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	Name updated	68913	APPROVED
2008-06-17	F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}	F344-Glis1_predicted^{Tn(sb-T2/Bart3)2.149Mcwi}	'predicted' is removed	2293819	APPROVED

External Database Links

Database	Acc Id	Source(s)
RRRC	RRRC:00332	RGD

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: F344-Glis1Tn(sb-T2/Bart3)2.149Mcwi

Strain: F344-Glis1^{Tn(sb-T2/Bart3)2.149Mcwi}