Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.MNS-(D10Mco62-D10Mco31)/Jr

Symbol: SS.MNS-(D10Mco62-D10Mco31)/Jr
Strain: SS.MNS-(D10Mco62-D10Mco31)
Substrain: Jr
RGD ID: 1641871
Citation ID: RRID:RGD_1641871
Ontology ID: RS:0001542
Previously known as: S.MNSX5; SS.MNS-(D10Mco62-D10Mco31)/Jr
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio, USA
Origin: This is a congenic substrain developed by crossing SS.MNS-(D10M11Mit119-D10Mit11/Jr to SS/Jr to get F2 which were again crossed with SS/Jr to duplicate the recombinant region
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21080,536,974 - 80,537,228RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01083,411,403 - 83,411,656RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01070,763,267 - 83,220,224RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41072,063,231 - 84,284,667RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
heart weight to body weight ratio

References

References - curated
# Reference Title Reference Citation
1. Two linked blood pressure quantitative trait loci on chromosome 10 defined by dahl rat congenic strains. Garrett MR, etal., Hypertension 2001 Oct;38(4):779-85.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Congenic mapping of a blood pressure QTL region on rat chromosome 10 using the Dahl salt-sensitive rat with introgressed alleles from the Milan normotensive strain. Saad Y, etal., Mamm Genome. 2008 Jan 4;.

Region

Position Markers

Flank 1 / 1 (D10Mco62)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01070,763,268 - 70,763,527NCBI
Rnor_5.01070,763,267 - 70,763,527NCBI
RGSC_v3.41072,063,231 - 72,063,491RGD
RGSC_v3.41072,063,232 - 72,063,491UniSTS
RGSC_v3.11072,077,601 - 72,077,861RGD
Celera1067,653,001 - 67,653,260UniSTS
Cytogenetic Map10 RGD

Flank 2 / 1 (D10Mco31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21080,536,974 - 80,537,228 (+)MAPPER
Rnor_6.01083,411,403 - 83,411,656NCBI
Rnor_5.01083,219,971 - 83,220,224UniSTS
RGSC_v3.41084,284,413 - 84,284,667RGD
RGSC_v3.41084,284,414 - 84,284,667UniSTS
RGSC_v3.11084,298,783 - 84,299,037RGD
Celera1079,308,972 - 79,309,225UniSTS
Cytogenetic Map10 RGD
Strain QTL Data
Symbol Name Trait
Bp303 Blood pressure QTL 303 arterial blood pressure trait   (VT:2000000)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SS.MNS-(D10Mco62-D10Mco31)/Jr    SS.MNS-(D10Mco62-D10Mco31)/Jr    Name updated 68913 APPROVED
2013-08-28 SS.MNS-(D10Mco62-D10Mco31)/Jr    SS.MNS-(D10Mco62-D10Mco31)/Jr    Name updated 68913 APPROVED