Strain Report - Rat Genome Database

Name: BBDP.WF-( D8Rat16-D8Sunn1467 )/Sunn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn

Symbol:

BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn

Strain:

BBDP.WF-(D8Rat16-D8Sunn1467)

Substrain:

Sunn

RGD ID:

1641857

Citation ID:

RRID:RGD_1641857

Ontology ID:

RS:0001175

Previously known as:

8d; BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn; BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn

Type:

congenic

Source:

Department of Medicine and Immunology, University of Toronto, Toronto, Ontario, Canada

Origin:

WF RT7.2 allele was introgressed onto the genetic background of BBDP rats and these were crossed with BBDP

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	94,388,671 - 123,815,899	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	8	101,304,999 - 133,273,132	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	8	100,780,886 - 132,425,312	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	8	98,878,516 - 128,970,675	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

type 1 diabetes mellitus (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased susceptibility to autoimmune diabetes (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

View expanded data table

Clinical Measurement

percentage of study population developing type 1 diabetes mellitus during a period of time

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	A novel susceptibility locus on rat chromosome 8 affects spontaneous but not experimentally induced type 1 diabetes.	Wallis RH, etal., Diabetes. 2007 Jun;56(6):1731-6. Epub 2007 Mar 27

Region

Position Markers

Flank 1 / 1 (D8Rat16)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	94,388,671 - 94,388,843 (+)	MAPPER
Rnor_6.0	8	101,304,999 - 101,305,168	NCBI
Rnor_5.0	8	100,780,886 - 100,781,055	UniSTS
RGSC_v3.4	8	98,878,516 - 98,878,889	RGD
RGSC_v3.4	8	98,878,558 - 98,878,727	UniSTS
RGSC_v3.1	8	98,898,013 - 98,898,182	RGD
Celera	8	93,872,544 - 93,872,713	UniSTS
RH 3.4 Map	8	1047.1	UniSTS
RH 3.4 Map	8	1047.1	RGD
RH 2.0 Map	8	815.3	RGD
SHRSP x BN Map	8	57.24	RGD
FHH x ACI Map	8	66.86	RGD

Flank 2 / 1 (D8Sunn1467)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	123,815,688 - 123,815,899 (+)	MAPPER
Rnor_6.0	8	133,272,922 - 133,273,132	NCBI
Rnor_5.0	8	132,425,102 - 132,425,312	UniSTS
RGSC_v3.4	8	128,970,465 - 128,970,675	UniSTS
Celera	8	122,910,769 - 122,910,987	UniSTS
Cytogenetic Map	8		RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_other	this strain shows no significant difference in age of type 1 diabetes onset between BBDP.WF-(D8Rat59-D8Sunn1467)/Sunn	1624306

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn

Mammalian Phenotype

Related Phenotype Data for Term "BBDP.WF-(D8Rat16-D8Sunn1467)/Sunn" (RS:0001175)