Strain Report - Rat Genome Database

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Strain: F344.GK-(D1Swe4-D1Rat85)/Swe

Symbol: F344.GK-(D1Swe4-D1Rat85)/Swe
Strain: F344.GK-(D1Swe4-D1Rat85)
Substrain: Swe
RGD ID: 1600346
Citation ID: RRID:RGD_1600346
Ontology ID: RS:0001302
Also Known As: N1IREC11; F344.GK-(D1Swe4-D1Rat85)/Swe; F344.GK-(D1Swe4-D1Rat85)/Swe
Type: congenic
Available Source: Not Available
Origination: Karolinska Institutet, Stockholm, Sweden
Description: This is a congenic substrain derived by intercrossing female F344/Crl and male F344.GK-(D1Arb42a-D1Rat90)/Swe. F2 progeny carried the homozygous GK/Swe genome in different segments. These were then maintained by bxs breeding.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21248,746,112 - 251,790,570RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01269,633,949 - 273,433,763RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01277,075,545 - 280,845,045RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41255,386,328 - 258,599,658RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. High-resolution quantitative trait locus analysis reveals multiple diabetes susceptibility loci mapped to intervals<800 kb in the species-conserved Niddm1i of the GK rat. Granhall C, etal., Genetics. 2006 Nov;174(3):1565-72. Epub 2006 Sep 1.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Swe4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21248,746,112 - 248,746,313 (+)MAPPER
Rnor_6.01269,633,949 - 269,634,149NCBI
Rnor_5.01277,075,545 - 277,075,745UniSTS
RGSC_v3.41255,386,328 - 255,386,528UniSTS
Celera1244,486,842 - 244,487,042UniSTS
Cytogenetic Map1 RGD

Flank 2 / 1 (D1Rat85)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21251,790,438 - 251,790,570 (+)MAPPER
Rnor_6.01273,433,632 - 273,433,763NCBI
Rnor_5.01280,844,914 - 280,845,045UniSTS
RGSC_v3.41258,599,525 - 258,599,656UniSTS
RGSC_v3.41258,599,379 - 258,599,658RGD
RGSC_v3.11258,865,295 - 258,865,574RGD
Celera1247,456,663 - 247,456,794UniSTS
RH 3.4 Map11658.9RGD
RH 3.4 Map11658.9UniSTS
RH 2.0 Map11273.9RGD
SHRSP x BN Map1143.5499RGD
Strain QTL Data
Symbol Name Trait
Niddm65 Non-insulin dependent diabetes mellitus QTL 65 blood glucose amount   (VT:0000188)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other This has a 4 Mb segment of GK/Swe which is within the proximal half of Niddm35 QTL. 1599587

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 F344.GK-(D1Swe4-D1Rat85)/Swe    F344.GK-(D1Swe4-D1Rat85)/Swe    Name updated 68913 APPROVED
2013-08-28 F344.GK-(D1Swe4-D1Rat85)/Swe    F344.GK-(D1Swe4-D1Rat85)/Swe    Name updated 68913 APPROVED