Strain Report - Rat Genome Database

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Strain: F344.GK-(D1Got250-D1Rat90)/Swe

Symbol: F344.GK-(D1Got250-D1Rat90)/Swe
Strain: F344.GK-(D1Got250-D1Rat90)
Substrain: Swe
RGD ID: 1600342
Citation ID: RRID:RGD_1600342
Ontology ID: RS:0001290
Also Known As: N1I12;F344.GK-(D1Got250-D1Rat90)/Swe; F344.GK-(D1Got250-D1Rat90)/Swe
Type: congenic
Available Source: Not Available
Origination: Karolinska Institutet, Stockholm, Sweden
Description: This is a congenic substrain derived by intercrossing female F344/Crl and male F344.GK-(D1Arb42a-D1Rat90)/Swe. F2 progeny carried the homozygous GK/Swe genome in different segments. These were then maintained by bxs breeding.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21252,080,660 - 259,647,894RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01273,787,505 - 281,795,785RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01281,200,731 - 289,137,268RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41259,168,938 - 267,111,153RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Separately inherited defects in insulin exocytosis and beta-cell glucose metabolism contribute to type 2 diabetes. Granhall C, etal., Diabetes. 2006 Dec;55(12):3494-500.
2. High-resolution quantitative trait locus analysis reveals multiple diabetes susceptibility loci mapped to intervals<800 kb in the species-conserved Niddm1i of the GK rat. Granhall C, etal., Genetics. 2006 Nov;174(3):1565-72. Epub 2006 Sep 1.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Got250)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21252,080,660 - 252,080,937 (+)MAPPER
Rnor_6.01273,787,505 - 273,787,781NCBI
Rnor_5.01281,200,731 - 281,201,007UniSTS
RGSC_v3.41259,168,938 - 259,169,215RGD
RGSC_v3.41259,168,939 - 259,169,215UniSTS
RGSC_v3.11259,434,854 - 259,435,131RGD
Celera1247,805,529 - 247,805,805UniSTS
RH 3.4 Map11664.7UniSTS
RH 3.4 Map11664.7RGD
RH 2.0 Map11280.5999RGD

Flank 2 / 1 (D1Rat90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21259,647,732 - 259,647,894 (+)MAPPER
Rnor_6.01281,795,624 - 281,795,785NCBI
Rnor_5.01289,137,107 - 289,137,268UniSTS
RGSC_v3.41267,110,926 - 267,111,087UniSTS
RGSC_v3.41267,110,921 - 267,111,153RGD
RGSC_v3.11267,322,011 - 267,322,172RGD
Celera1255,291,309 - 255,291,470UniSTS
RH 3.4 Map11708.8RGD
RH 3.4 Map11708.8UniSTS
RH 2.0 Map11313.1999RGD
SHRSP x BN Map1148.15RGD
Strain QTL Data
Symbol Name Trait
Niddm66 Non-insulin dependent diabetes mellitus QTL 66 blood glucose amount   (VT:0000188)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 F344.GK-(D1Got250-D1Rat90)/Swe    F344.GK-(D1Got250-D1Rat90)/Swe    Name updated 68913 APPROVED
2013-08-28 F344.GK-(D1Got250-D1Rat90)/Swe    F344.GK-(D1Got250-D1Rat90)/Swe    Name updated 68913 APPROVED