Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: F344.GK-(D1Mgh14-D1Rat90)/Swe

Symbol: F344.GK-(D1Mgh14-D1Rat90)/Swe
Strain: F344.GK-(D1Mgh14-D1Rat90)
Substrain: Swe
RGD ID: 1600337
Citation ID: RRID:RGD_1600337
Ontology ID: RS:0001298
Also Known As: N1I3; F344.GK-(D1Mgh14-D1Rat90)/Swe; F344.GK-(D1Mgh14-D1Rat90)/Swe
Type: congenic
Available Source: Not Available
Origination: Karolinska Institutet, Stockholm, Sweden
Description: This is a congenic substrain derived by intercrossing female F344/Crl and male F344.GK-(D1Arb42a-D1Rat90)/Swe. F2 progeny carried the homozygous GK/Swe genome in different segments. These were then maintained by bxs breeding.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,448,513 - 259,647,894RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01278,228,767 - 281,795,785RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01285,604,773 - 289,137,268RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41263,698,966 - 267,111,153RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Separately inherited defects in insulin exocytosis and beta-cell glucose metabolism contribute to type 2 diabetes. Granhall C, etal., Diabetes. 2006 Dec;55(12):3494-500.
2. High-resolution quantitative trait locus analysis reveals multiple diabetes susceptibility loci mapped to intervals<800 kb in the species-conserved Niddm1i of the GK rat. Granhall C, etal., Genetics. 2006 Nov;174(3):1565-72. Epub 2006 Sep 1.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21256,448,513 - 256,448,636 (+)MAPPER
Rnor_6.01278,228,767 - 278,228,889NCBI
Rnor_5.01285,604,773 - 285,604,895UniSTS
RGSC_v3.41263,698,966 - 263,699,089RGD
RGSC_v3.41263,698,967 - 263,699,089UniSTS
RGSC_v3.11263,910,012 - 263,910,134RGD
Celera1252,144,762 - 252,144,884UniSTS
RH 3.4 Map11678.8UniSTS
RH 3.4 Map11678.8RGD
RH 2.0 Map11305.9RGD
SHRSP x BN Map1143.5499RGD
FHH x ACI Map1132.2199RGD
Cytogenetic Map1 RGD

Flank 2 / 1 (D1Rat90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21259,647,732 - 259,647,894 (+)MAPPER
Rnor_6.01281,795,624 - 281,795,785NCBI
Rnor_5.01289,137,107 - 289,137,268UniSTS
RGSC_v3.41267,110,926 - 267,111,087UniSTS
RGSC_v3.41267,110,921 - 267,111,153RGD
RGSC_v3.11267,322,011 - 267,322,172RGD
Celera1255,291,309 - 255,291,470UniSTS
RH 3.4 Map11708.8RGD
RH 3.4 Map11708.8UniSTS
RH 2.0 Map11313.1999RGD
SHRSP x BN Map1148.15RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 F344.GK-(D1Mgh14-D1Rat90)/Swe    F344.GK-(D1Mgh14-D1Rat90)/Swe    Name updated 68913 APPROVED
2013-08-28 F344.GK-(D1Mgh14-D1Rat90)/Swe    F344.GK-(D1Mgh14-D1Rat90)/Swe    Name updated 68913 APPROVED